View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_18 (Length: 251)
Name: NF10154_low_18
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 20481264 - 20481027
Alignment:
| Q |
12 |
caaaggaaaaagaaaacaacacaaaaatgactactctctagaaaagaaagtttcatctgcatcaatctt-aaggagatttaagtgatcatcggaggtatg |
110 |
Q |
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| T |
20481264 |
caaaggaaaaagaaaacaacacaaaaatgactactctctagaaaagaaagtttcagctgcatcaatctttaaggagatttaagtgatcatcggaggtatg |
20481165 |
T |
|
| Q |
111 |
gtagagcagctcagtatccgaagagactccaaacttctctaacagtatggtaaaccgcggcattgttttgctccatcaaatcttgcccatcttgaatcaa |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||||| |||| |||||| |||||| |
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| T |
20481164 |
gtagagcagctcagtatctaaagagactccaaacttctctaacagtatggtaaaccgtgacattgttttggtccagcaaattttgcacatcttaaatcaa |
20481065 |
T |
|
| Q |
211 |
gaagaagactaattcatattgtatatttgagttaaaca |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20481064 |
gaagaagactaattcatattgtatatttgagttaaaca |
20481027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 3660358 - 3660400
Alignment:
| Q |
46 |
tctctagaaaagaaagtttcatctgcatcaatcttaaggagat |
88 |
Q |
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| T |
3660358 |
tctctagaaaagaaagtttcagccgcatcaatcttaaggagat |
3660400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 13473132 - 13473046
Alignment:
| Q |
15 |
aggaaaaagaaaacaacacaaaaatgactactctctagaaaagaaagtttcatctgcatcaatcttaaggagatttaagtgatcatc |
101 |
Q |
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| T |
13473132 |
aggaaaaagaaaacaacacaaaaaggaccattctctagaaaagaaagtttcagttgcgtccatcttaaggagattcaagagatcatc |
13473046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 47108101 - 47107978
Alignment:
| Q |
29 |
aacacaaaaatgactactctctagaaaagaaagtttcatctgcatcaatcttaaggagatttaagtgatcatc------ggaggtatggtagagcagctc |
122 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||| | || || ||| |||||||||| || ||||||| ||||| |||||||| || ||| |
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| T |
47108101 |
aacacaaaaaggactaatctctagaaaagaaagtctcagccgcgtccatcctaaggagattcaaaagatcatccggaggggaggaatggtagaacaactc |
47108002 |
T |
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| Q |
123 |
agtatccgaagagactccaaactt |
146 |
Q |
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| T |
47108001 |
agtatccgaagaggctcaaaactt |
47107978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 22655033 - 22654986
Alignment:
| Q |
41 |
actactctctagaaaagaaagtttcatctgcatcaatcttaaggagat |
88 |
Q |
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|||| ||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
22655033 |
actaatctctagaaaagaaagtttcagccgcatcaatcttgaggagat |
22654986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 41626594 - 41626557
Alignment:
| Q |
43 |
tactctctagaaaagaaagtttcatctgcatcaatctt |
80 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
41626594 |
tactctctagaaaagaaagtttcacttgcatcaatctt |
41626557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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