View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_20 (Length: 245)
Name: NF10154_low_20
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31869661 - 31869427
Alignment:
| Q |
1 |
ctcaaatatcttgctggtctgtgtgtatccgatgtttattgaacnnnnnnnntgttatgttttgtgatttttaggtagctacaatcatctgtactttcct |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869661 |
ctcaaatatcttgctggtctgtgtgtatccaatgtttattgaacaaaaaaaatgttatgttttgtgatttttaggtagctacaatcatctgtactttcct |
31869562 |
T |
|
| Q |
101 |
gtaaaagcatatatatgtaagtattcaactgatattggttttctttggcttgaatttcatacagggctaagaaagtgactaaaatgacagagagtgttgc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869561 |
gtaaaagcatatatatgtaagtatacaactgatattggttttctttggcttgaatttcatacagggctaagaaagtgactaaaatgacagagagtgttgc |
31869462 |
T |
|
| Q |
201 |
caagggggtcctcactggagttgtgaaggtctctg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31869461 |
caagggggtcctcactggagttgtgaaggtctctg |
31869427 |
T |
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