View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_21 (Length: 242)
Name: NF10154_low_21
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 7112372 - 7112596
Alignment:
| Q |
18 |
gagagttccacttgaatctccttcagacgaagcctcacgcgacttggtaaacgaactcgaaagatcagcatagagatcaaccactcttctgatattacta |
117 |
Q |
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| T |
7112372 |
gagagttccacttgaatctccttcagacgaagcctcacgcgatttggtaaacgaactcgaaagatcagcatagagatcaaccactcttctgatattacta |
7112471 |
T |
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| Q |
118 |
ttcagctctttaatcaaactaacatttctgctcagattatcaggaatcctagactcatgattttggtttatctggttgattaaaagccgattttgattca |
217 |
Q |
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| T |
7112472 |
ttcagctctttaatcaaactaacatttctgctcagattatcaggaatcctagactcatgattttggtttatctggttgattaaaagccgattttgattca |
7112571 |
T |
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| Q |
218 |
aaatatcttgtgcttgcactaagct |
242 |
Q |
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| T |
7112572 |
aaatatcttgtgcttgcactaagct |
7112596 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 18124625 - 18124490
Alignment:
| Q |
64 |
gtaaacgaactcgaaagatcagcatagagatcaaccactcttctgatattactattcagctctttaatcaaactaacatttctgctcagattatcaggaa |
163 |
Q |
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| T |
18124625 |
gtaaaagaacttgaaagatcagcatataaatcaaccactcttctaatattgttgttgagctctttaattagtccaacatttctgctgagattatcaggaa |
18124526 |
T |
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| Q |
164 |
tcctagactcatgattttggtttatctggttgatta |
199 |
Q |
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| T |
18124525 |
ttttggattcatgattttggtttatctcattgatta |
18124490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 52102314 - 52102149
Alignment:
| Q |
25 |
ccacttgaatctccttcagacgaagcctcacgcgacttggtaaacgaactcgaaagatcagcatagagatcaaccactcttctgatattactattcagct |
124 |
Q |
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| T |
52102314 |
ccacttgaatctccttcggaagaaacatcatttgatttggtgaaggaagttgaaagatctgcataaaggtcaacaactcttctgatgttgctgttaagct |
52102215 |
T |
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| Q |
125 |
ctttaatcaaactaacatttctgctcagattatcaggaatcctagactcatgattttggtttatct |
190 |
Q |
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| T |
52102214 |
ccttaataagaccaacattcttgttgaggttgtcagggaccctagactcgtgattctggtttatct |
52102149 |
T |
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