View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_22 (Length: 239)
Name: NF10154_low_22
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_22 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 5284808 - 5285033
Alignment:
| Q |
16 |
cagaaaacaacaattgatcacagattcggccaattatgccttagtatttaaacacattttgtactct--atagtctggacagtgacaaacaacacattat |
113 |
Q |
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| T |
5284808 |
cagaaaacaacaattgatcacagattcggccaattatgccttagtatttaaacacattttgtactctctatagtctggacagtgacaaacaacacattat |
5284907 |
T |
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| Q |
114 |
tcatatttatgttaaacaattgaatttgaagttaccctttacgatgatgaagttgaagttttgcttttgagttcaaaataggtgcagaggatgaagctat |
213 |
Q |
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| T |
5284908 |
tcatatttatgttaaacaattgaatttgaagttaccctttacgatgatgacgttgaagttttgcttttgagttcaaaataggtgcagaggatgaagctat |
5285007 |
T |
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| Q |
214 |
agacatcctttacaatcttcaattat |
239 |
Q |
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| T |
5285008 |
agacatcctttacaatcttcaattat |
5285033 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 24890694 - 24890610
Alignment:
| Q |
156 |
gatgatgaagttgaag-ttttgcttttgagttcaaaataggtgcagaggatgaagctatagacatcctttacaatcttcaattat |
239 |
Q |
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| T |
24890694 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctataaacatcctttacaatcttcaattat |
24890610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 24899273 - 24899357
Alignment:
| Q |
156 |
gatgatgaagttgaag-ttttgcttttgagttcaaaataggtgcagaggatgaagctatagacatcctttacaatcttcaattat |
239 |
Q |
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| T |
24899273 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctataaacatcctttacaatcttcaattat |
24899357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 24906732 - 24906816
Alignment:
| Q |
156 |
gatgatgaagttgaag-ttttgcttttgagttcaaaataggtgcagaggatgaagctatagacatcctttacaatcttcaattat |
239 |
Q |
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| T |
24906732 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctataaacatcctttacaatcttcaattat |
24906816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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