View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_23 (Length: 238)
Name: NF10154_low_23
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 11742597 - 11742709
Alignment:
| Q |
1 |
agatttatattgcttttatctagtttcattgactaaagaaattagctatactgttttggatctaaaatcataataatatcctattttctgtcgagtctta |
100 |
Q |
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| T |
11742597 |
agatttatattgcttttatctagtttcattgactaaagaaattagctatactgttttggatctaaaatcataataatatcctatttcctgtcgagtctta |
11742696 |
T |
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| Q |
101 |
atataagaataaa |
113 |
Q |
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||||||||||||| |
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| T |
11742697 |
atataagaataaa |
11742709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 11742972 - 11743077
Alignment:
| Q |
105 |
aagaataaaataaagagcataattatcttgtattaagagtcctatatcatatagtgatgacatatatttataagcggaggtaatcatcacttcacaaacc |
204 |
Q |
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|||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||| |
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| T |
11742972 |
aagaataaaataaagagcctaattatctagtgttaagagtcctatatcatatagtgatgacatatatttataaatgggagcaatcatcacatcacaaacc |
11743071 |
T |
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| Q |
205 |
gatttt |
210 |
Q |
| |
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| |||| |
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| T |
11743072 |
ggtttt |
11743077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 12489025 - 12488988
Alignment:
| Q |
186 |
aatcatcacttcacaaaccgattttatggggttatgtt |
223 |
Q |
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| T |
12489025 |
aatcatcacttcacaaactgattttatggggttgtgtt |
12488988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 32908792 - 32908740
Alignment:
| Q |
171 |
tttataagcggaggtaatcatcacttcacaaaccgattttatggggttatgtt |
223 |
Q |
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|||||||| ||||| ||||||||| |||||||||| |||| ||||||||||| |
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| T |
32908792 |
tttataagtggaggcaatcatcacctcacaaaccggttttgaggggttatgtt |
32908740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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