View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_29 (Length: 218)
Name: NF10154_low_29
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 26719562 - 26719359
Alignment:
| Q |
13 |
gcagagactaggcaacaaaaataaaataacttaa-tgttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaatatg |
111 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26719562 |
gcagagactaggcatcaaaaataaaataacttaaatgttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaatgtg |
26719463 |
T |
|
| Q |
112 |
ttaactccacttt------------acttgtgggggcctattacaccctgagcaaatctcaaccaatagggaagagacacctattacttgtagtacaagt |
199 |
Q |
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|||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26719462 |
ttaattccacttttacaaaccttaaacttgtgggggcttattacaccatgagcaaatctcaaccaatagggaagagacacctattacttgtagtacaagt |
26719363 |
T |
|
| Q |
200 |
aact |
203 |
Q |
| |
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|||| |
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|
| T |
26719362 |
aact |
26719359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 26809075 - 26809018
Alignment:
| Q |
49 |
ttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaa |
106 |
Q |
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||||||| |||| ||||||||||| |||||||||||| ||||||||| ||||| |||| |
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| T |
26809075 |
ttttttatggaaaatgggatagttcatcaaagtacatctgttaactcacctcatcaaa |
26809018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 52684360 - 52684301
Alignment:
| Q |
49 |
ttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat |
108 |
Q |
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||||||| |||| ||||||||||| |||||||||||||||||||||| || ||||||||| |
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|
| T |
52684360 |
ttttttatggaaaatgggatagttcatcaaagtacatgtgttaactcaccccaacaaaat |
52684301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 52978497 - 52978451
Alignment:
| Q |
62 |
atgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat |
108 |
Q |
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||||||||||| |||||||||||||||||||||| || ||| ||||| |
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| T |
52978497 |
atgggatagttcatcaaagtacatgtgttaactcaccccaataaaat |
52978451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 36089766 - 36089707
Alignment:
| Q |
49 |
ttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat |
108 |
Q |
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||||||| |||| ||| ||||||| |||||||||||||||||||||| || ||||||||| |
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|
| T |
36089766 |
ttttttatggaaaatgagatagttcatcaaagtacatgtgttaactcaccccaacaaaat |
36089707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 33718087 - 33718146
Alignment:
| Q |
49 |
ttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat |
108 |
Q |
| |
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||||||| |||| ||||||||||| ||||||||||||||||||||| || ||||||||| |
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| T |
33718087 |
ttttttatggaaaatgggatagttcatcaaagtacatgtgttaacttaccccaacaaaat |
33718146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 18931391 - 18931450
Alignment:
| Q |
49 |
ttttttaaggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat |
108 |
Q |
| |
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||||||| |||| ||||||||||| | |||||||||||||||| ||| || ||||||||| |
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| T |
18931391 |
ttttttatggaaaatgggatagttcagcaaagtacatgtgttagctcaccccaacaaaat |
18931450 |
T |
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