View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10154_low_3 (Length: 547)
Name: NF10154_low_3
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 207 - 534
Target Start/End: Complemental strand, 11346798 - 11346468
Alignment:
| Q |
207 |
ttcaacctctatatcacttttccgaactatatatttgcaggaaaagtgaccaaatattgttgatgttatacatctttaataatcaattcccttattaaca |
306 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11346798 |
ttcaacctctatgtcacttttccggactatatgtttgcaggaaaagtgatcaaatattgttgatgttatacatctttaataatcaattcccttattaaca |
11346699 |
T |
|
| Q |
307 |
caaaaaagacaataatcctattgttacaagtactaaaatagtcgatctagtttctttttatattctttgttttgattttgagattttctaaacaagcgtc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11346698 |
caaaaaagacaataatcctattgttacaagtactaaaatagtcgatctagtttctttttatattctttgttttgattttgagattttctgaacaagcg-- |
11346601 |
T |
|
| Q |
407 |
atcattcttctcagataaatttcttattactccgaataatccta------agcgtcggcgtcaatgtcttatgcgaaattgtaaaatccaaaggacaaac |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11346600 |
-ccattcttctcagataaatttcttattactccgaataaccttaggcgttggcgtcggcgtcaatgtcttatgcgaaattgtaaaatccaaaggacaaac |
11346502 |
T |
|
| Q |
501 |
aatttccaacaactcctgccaataatgttcttct |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11346501 |
aatttccaacaactcctgccaataatgttcttct |
11346468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 11347093 - 11346976
Alignment:
| Q |
35 |
agaagaaggggacaaccattgttatcaagaaatacgaggaaattgagggattatccttgaacatgttgtttcattcatagtgtttggtgcttttcattgc |
134 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11347093 |
agaagaaggggacaaccattgttatcaggaaatacgaggaaattgtgggattatccttgaacatgttgtttcattcatagtgtttggtgcttgtcattgc |
11346994 |
T |
|
| Q |
135 |
tatcataattccaagcca |
152 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
11346993 |
tatcatacttccaagcca |
11346976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 257 - 523
Target Start/End: Complemental strand, 40359550 - 40359278
Alignment:
| Q |
257 |
caaatattg-ttgatgttatacatctttaataatcaattcccttattaacacaaaaaagacaataatcctattgttacaagtactaaaatagtcgatcta |
355 |
Q |
| |
|
||||||||| |||||| || ||||||||||||| ||||| |||| ||| ||||||| |||| ||||| |||||||||||||| | ||||||| ||| | |
|
|
| T |
40359550 |
caaatattgattgatgccatgcatctttaataattaattcacttactaatacaaaaacaacaacaatccaattgttacaagtacaacaatagtcaatcca |
40359451 |
T |
|
| Q |
356 |
gtttctttttatattctttgttttgattttgagattttctaaacaagcgtcatcattcttctca--------gataaatttcttattactccgaataatc |
447 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||| |||||||| || ||||||| ||| ||| ||||||||||| ||||||||| | |
|
|
| T |
40359450 |
atttctttttgttttctttgttttaattttgagattttttaaacaag---caccattcttttcaaatctacgaatagatttcttattattccgaataacc |
40359354 |
T |
|
| Q |
448 |
ctaagcgtcggcgtcaatgtcttatgcgaaattgtaaaatccaaaggacaaacaatttccaacaactcctgccaat |
523 |
Q |
| |
|
||| | |||| | ||| ||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
40359353 |
ctagacatcggtgccaacgtcttatgcagaattgtaatatcaaaaggacaaacaaactccaacaactcctgccaat |
40359278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 40363661 - 40363583
Alignment:
| Q |
315 |
acaataatcctattgttacaagtactaaaatagtcgatctagtttctttttatattctttgttttgattttgagatttt |
393 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
40363661 |
acaataatcctattgttacaagtacaacaatagtcaatctagtttctttttgttttctttgttttatttttgagatttt |
40363583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 40363750 - 40363682
Alignment:
| Q |
257 |
caaatattgttgatgttatacatctttaataatcaattcccttattaacacaaaaaagacaataatcct |
325 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | |||||||| ||||||| ||||||||||| |
|
|
| T |
40363750 |
caaatattgttgatgtcatacatctttaataaccaatgctcttattaatacaaaaacaacaataatcct |
40363682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 40363505 - 40363441
Alignment:
| Q |
467 |
tcttatgcgaaattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataatgttc |
530 |
Q |
| |
|
||||||| |||| |||| |||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
40363505 |
tcttatggaaaatcgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttc |
40363441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University