View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10154_low_4 (Length: 449)
Name: NF10154_low_4
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 33037420 - 33037849
Alignment:
| Q |
18 |
aaacgtaaggtgaatcctctttcaaccaagcaaaacgtaggaggccttcaaatatgcacatcaaaacaactacttaatttaacgtacatatgttcggttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33037420 |
aaacgtaaggtgaatcctctttcaaccaagcaaaacgtaggaggcctacaaatatgcacatcaaaacaactacttaatttaacgtacatatgttcggttt |
33037519 |
T |
|
| Q |
118 |
tgcggtgacaataatttagtttgaatgaattgattatgtgaaattgattctgcctgaaaggaagttgaagataaatcatttatgtttaaatcagttatag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
33037520 |
tgcggtgacaataatttagtttgaatgaattgattatgtgaaattgattccgcctgaaaggaagttgaagataaatcgtttatgtttgaatcagttataa |
33037619 |
T |
|
| Q |
218 |
gataaaaaactaaatcacctaacttcaaatataatcaattggaaaggagaaataaattttactctaaaaaataaatcgaacatgttaaaatcaatttgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33037620 |
gataaaaaactaaatcacctaacttcaaatataatcaattggtaaggagaaataaattttactctaaaaa--aaatcgaacatgttaaaatcaatttgat |
33037717 |
T |
|
| Q |
318 |
ataagggtaaatagtcattttcgtctctgtgtaacgagtagacacattagtttttgaatgtgacgaaattacaaagtagttcccctgtctaatttgttgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
33037718 |
ataagggtaaatagtcattttcgtctctgtgtaacgagtagacacagtagtttttagatgtgacgaaattagaaaatagttccccgagctaatttgttgt |
33037817 |
T |
|
| Q |
418 |
tcaaaatagtcattgacaaagttaaaatagac |
449 |
Q |
| |
|
|||||||| || |||||||||| ||||||||| |
|
|
| T |
33037818 |
tcaaaataatccttgacaaagtcaaaatagac |
33037849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 37745787 - 37745847
Alignment:
| Q |
106 |
tatgttcggttttgcggtgacaataatttagtttgaatgaattgattatgtgaaattgatt |
166 |
Q |
| |
|
|||||| ||||||||||||| ||||||| | ||||| |||||||||||||| ||||||||| |
|
|
| T |
37745787 |
tatgtttggttttgcggtgataataattgattttgagtgaattgattatgtaaaattgatt |
37745847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 40704745 - 40704716
Alignment:
| Q |
137 |
tttgaatgaattgattatgtgaaattgatt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40704745 |
tttgaatgaattgattatgtgaaattgatt |
40704716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 23104757 - 23104701
Alignment:
| Q |
113 |
ggttttgcggtgacaataatttagtttgaatgaattgattatgtgaaattgattctg |
169 |
Q |
| |
|
|||| ||||||||||| |||| | ||| |||||||||||||||| |||||||||||| |
|
|
| T |
23104757 |
ggttatgcggtgacaaaaattaattttaaatgaattgattatgtaaaattgattctg |
23104701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 24364098 - 24364143
Alignment:
| Q |
123 |
tgacaataatttagtttgaatgaattgattatgtgaaattgattct |
168 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
24364098 |
tgacaaaaattgattttgaatgaattgattatgtaaaattgattct |
24364143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 32994160 - 32994215
Alignment:
| Q |
137 |
tttgaatgaattgattatgtgaaattgattctgcctgaaaggaagttgaagataaa |
192 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||| |||||||| |||| |
|
|
| T |
32994160 |
tttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaa |
32994215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 40491774 - 40491688
Alignment:
| Q |
106 |
tatgttcggttttgcggtgacaataatttagtttgaatgaattgattatgtgaaattgattctgcctgaaaggaagttgaagataaa |
192 |
Q |
| |
|
|||||| |||| ||||||||||| |||| | ||||| |||||||||| ||| ||||||||| || || |||| |||||||| |||| |
|
|
| T |
40491774 |
tatgtttggttctgcggtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaa |
40491688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 44771908 - 44771864
Alignment:
| Q |
122 |
gtgacaataatttagtttgaatgaattgattatgtgaaattgatt |
166 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
44771908 |
gtgacaagaattgattttgaatgaattgattatgtaaaattgatt |
44771864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University