View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_5 (Length: 423)
Name: NF10154_low_5
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 78 - 257
Target Start/End: Complemental strand, 17489166 - 17488988
Alignment:
| Q |
78 |
aaggcagtaatttatcatcttcttcccttttcccaaaattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaag |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17489166 |
aaggcagtaatttatcatcttcttcccttttcccaaaattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaag |
17489067 |
T |
|
| Q |
178 |
attcgttattatccaatgaaaaataaatcattgtggggggtcgttggttcgttatattctaaagacatttgcattatttg |
257 |
Q |
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| T |
17489066 |
gttcgttattatccaatg-aaaataaatctttgtggggggtcgttggttcgttatattctaaagacatttgcattatttg |
17488988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 78 - 286
Target Start/End: Original strand, 17564048 - 17564267
Alignment:
| Q |
78 |
aaggcagtaatttatcatcttcttcccttttcccaaaattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaag |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564048 |
aaggcagtaatttatcatcttcttcccttttcccaaaattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaag |
17564147 |
T |
|
| Q |
178 |
attcgttattatccaatgaaaaataaatcattgtggggggtcgttggttcgttatattctaaagacatttgcattatttg------------tgaaatgt |
265 |
Q |
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| T |
17564148 |
gttcgttattatccaatgaaaa-taaatctttgtggggggtcgttggttcgttatattctaaagacatttgcattatttgcttgtttgtttgtgaaatgt |
17564246 |
T |
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| Q |
266 |
ttttattttcattcatatttg |
286 |
Q |
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| T |
17564247 |
ttttattttcattcatatttg |
17564267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 17563984 - 17564226
Alignment:
| Q |
14 |
caaaggtaacgattaagtgaagtcaatagcatacacttcnnnnnnnnnnnnnnnnnnnnnnnnnaaggcagtaatttatcatcttcttcccttttcccaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17563984 |
caaaggtaacgattaagtgaagtcaatagcatacacttcttcttattatttttattatattttaaaggcagtaatttatcatcttcttcccttttcccaa |
17564083 |
T |
|
| Q |
114 |
aattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaagattcgttattatccaatgaaaaataaatcattgtgg |
213 |
Q |
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| T |
17564084 |
aattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaaggttcgttattatccaatg-aaaataaatctttgtgg |
17564182 |
T |
|
| Q |
214 |
ggggtcgttggttcgttatattctaaagacatttgcattatttg |
257 |
Q |
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| T |
17564183 |
ggggtcgttggttcgttatattctaaagacatttgcattatttg |
17564226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 17489230 - 17489192
Alignment:
| Q |
14 |
caaaggtaacgattaagtgaagtcaatagcatacacttc |
52 |
Q |
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| T |
17489230 |
caaaggtaacgattaagtgaagtcaatagcatacacttc |
17489192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 17488979 - 17488947
Alignment:
| Q |
254 |
tttgtgaaatgtttttattttcattcatatttg |
286 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17488979 |
tttgtgaaatgtttttattttcattcatatttg |
17488947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 391
Target Start/End: Complemental strand, 17488872 - 17488842
Alignment:
| Q |
361 |
attattgatacaattttcatcttgtataaca |
391 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17488872 |
attattgatacaattttcatcttgtataaca |
17488842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 17564342 - 17564372
Alignment:
| Q |
361 |
attattgatacaattttcatcttgtataaca |
391 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
17564342 |
attattgatacaattttcatcttgtataaca |
17564372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 78 - 256
Target Start/End: Complemental strand, 1917352 - 1917175
Alignment:
| Q |
78 |
aaggcagtaatttatcatcttcttcccttttcccaaaattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaag |
177 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1917352 |
aaggcagtaatttatcatcttcttcccttttcccaaaattaattgggtagtttaatttaaaaccctctacaaaaagagtgtagcttaagcaaagtgaaag |
1917253 |
T |
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| Q |
178 |
attcgttattatccaatgaaaaataaatcattgtggggggtcgttggttcgttatattctaaagacatttgcattattt |
256 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1917252 |
gttcgttattatccaatg-aaaataaatcattgtggggggtcgttggtgcgttatattctaaagacatttgcattattt |
1917175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 1917416 - 1917378
Alignment:
| Q |
14 |
caaaggtaacgattaagtgaagtcaatagcatacacttc |
52 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1917416 |
caaaggtaacgattaagtgaagtcaatagcatacacttc |
1917378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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