View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_7 (Length: 387)
Name: NF10154_low_7
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 53853624 - 53853982
Alignment:
| Q |
13 |
taggagtgaattgacatgttgattattccagttctctaatcaactaaaattaaaacactactactattaagactcaaagtgtctcgattataagagcaac |
112 |
Q |
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| T |
53853624 |
taggagtgaattgacatgttgat-attccagttctctaatcaactgaaattaaaacactactactattaagactcaaagtgtctcgattataagagcaac |
53853722 |
T |
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| Q |
113 |
actacacataaatttctagcataaagtatataacatttctttgttgaatcagtagtatataacatttataatgttcgaaagtataaatacaaattttata |
212 |
Q |
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| T |
53853723 |
actacacataaatttctagcataaagtatataacatttctttgttgaatcagtagtatataacatttataatgttcgaaagcataaatacaaattttata |
53853822 |
T |
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| Q |
213 |
attgagaactgatttaggatgtttttattgagaaaagatgatatgtaccaataaaaattgagtatagttaatgaatgttgacatagttaataatactaag |
312 |
Q |
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| T |
53853823 |
attgagaactgatttaggatgtttttattgagaaaagatgatatgtaccaataaaaattgagtatagttaatgaatgttaacatagttaataatactaag |
53853922 |
T |
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| Q |
313 |
ttgatttatttgaaatgtcataagttcaatttttgttggctatgtgatgatcatttttgt |
372 |
Q |
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| T |
53853923 |
ttgatttatttgaaatgtcataagttcaatttttgtcttctatgtgaggatcatttttgt |
53853982 |
T |
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