View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10155_high_7 (Length: 237)
Name: NF10155_high_7
Description: NF10155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10155_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 11354657 - 11354537
Alignment:
| Q |
1 |
agaagagagattttgtattgtattctgaagcctggcttgacataggttattttgatgatgttcaaatgactgatgggttttacttagcatgttgttcctt |
100 |
Q |
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| T |
11354657 |
agaagagagattttgtattgtattctgaagcctgccttgacataggttattttgatgatgttcaaatgactgatgggttttacttagcatgttattcctt |
11354558 |
T |
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| Q |
101 |
tattagtttcgcttagattat |
121 |
Q |
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|||||||| ||||||||||| |
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| T |
11354557 |
tattagttgggcttagattat |
11354537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 11354545 - 11354510
Alignment:
| Q |
179 |
ttagcttatagcctaagtaaatttcattcataatgt |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
11354545 |
ttagattatagcctaagtaaatttcattcataatgt |
11354510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 9338395 - 9338224
Alignment:
| Q |
43 |
taggttattttgatgatgttcaaatgactgatgggttttacttagcatgttgttcctttattagtttcgcttagattatgttaaagcacccagggaatct |
142 |
Q |
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| T |
9338395 |
taggttgttttgatgatgttcaaatgactggtgggttttacttagcattttattcctttattagtttagcttagattatgttaaagcacccaagtaatat |
9338296 |
T |
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| Q |
143 |
gtgtctcttagtactgcttgatttcttgtggtctgattagcttatagcctaagtaaatttcattcataatgt |
214 |
Q |
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| T |
9338295 |
gcgtctcttagtactgtgtgattccttgtgtcctggttagcttatagcccaagtaaaattcattcataatgt |
9338224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 24506973 - 24507076
Alignment:
| Q |
84 |
ttagcatgttgttcctttattagtttcgcttagattatgttaaagcacccagggaatctgtgtctcttagtactgcttgatttcttgtggtctgattagc |
183 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||| | || ||||| |||| ||| || ||||| |||||| ||| ||||| |
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| T |
24506973 |
ttagcatgttgttcctttgatagtttagcttagattatgttaaagcacccaagcaacatgtgtatctttgtattgtgtgattccttgtgttctagttagc |
24507072 |
T |
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| Q |
184 |
ttat |
187 |
Q |
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|||| |
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|
| T |
24507073 |
ttat |
24507076 |
T |
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