View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10155_low_1 (Length: 709)
Name: NF10155_low_1
Description: NF10155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10155_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Complemental strand, 49042571 - 49041881
Alignment:
| Q |
1 |
aaagaaagactaacggcggagatggatttcaaagattcaacctccgccgttatcaaaatccggcgacgtttaccggattttctacaaacggtgaaactca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042571 |
aaagaaagactaacggcggagatggatttcaaagattcaacctccgccgttatcaaaatccggcgacgtttaccggattttctacaaacggtgaaactca |
49042472 |
T |
|
| Q |
101 |
agtacgtaaagttaggttatggctattcatgcaatgccacaaccattctcattttcacattcgtcgtccctctcttactcttcctcaccgttcagttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042471 |
agtacgtaaagttaggttatggctattcatgcaatgccacaaccattctcattttcacattcgtcgtccctctcttactcttcctcaccgttcagttcca |
49042372 |
T |
|
| Q |
201 |
actcaccgatctaaaactccaccgtctctcacaactcttactcgaacacaccgtccaacttgacaccgatacagccatcggttcaatctttctactcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042371 |
actcaccgatctaaaactccaccgtctctcacaactcttactcgaacacaccgtccaacttgacaccgatacagccatcggttcaatctttctactcttc |
49042272 |
T |
|
| Q |
301 |
ctctttggtctgtactacgcgaaacgatccccaccaatttacctggtggactttgcgtgctacaaacctgagaatgagcggaaaattgcagttgattctt |
400 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49042271 |
ctttttggtctgtactacgctaaacgatccccaccaatttacctggtggactttgcttgctacaaacctgagaatgagcggaaaattgcagttgaatctt |
49042172 |
T |
|
| Q |
401 |
tcgttaaaatgttagaagatagtggcgaattcggagaagaaacacttcaatttcaacgccgcattttgtcaagagcaggtcttggtgatgaaacttcctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042171 |
tcgttaaaatgttagaagatagtggcgaattcggagaagaaacacttcaatttcaacgccgcattttgtcaagagcaggtcttggtgatgaaacttcctt |
49042072 |
T |
|
| Q |
501 |
gccaaacggaataatgtcaagtccaccaaatctatgcatgaaagaagcgcgtttagaagccgaagctgtaatgtttggagcattagacgcactttttgct |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
49042071 |
gccaaacggaataatgtcaagtccaccaaatctatgcatgaaagaagcgcgtttagaagccgaatctgtaatgtttggatcattagacgcactttttgct |
49041972 |
T |
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| Q |
601 |
aaaacatgtgttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtga |
691 |
Q |
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| T |
49041971 |
aaaacaggtgttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtga |
49041881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 603 - 691
Target Start/End: Original strand, 26463824 - 26463912
Alignment:
| Q |
603 |
aacatgtgttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtga |
691 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26463824 |
aacatgtgttaattcaagagacattgacatccttgttgtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtga |
26463912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 689
Target Start/End: Original strand, 26452751 - 26452806
Alignment:
| Q |
634 |
cttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgt |
689 |
Q |
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|||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| |
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| T |
26452751 |
cttgttgttaattgtagtttgtttaatccaacgccatcactttcagctatgattgt |
26452806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 691
Target Start/End: Original strand, 15237143 - 15237197
Alignment:
| Q |
637 |
gttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtga |
691 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||| |||||||||| |
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| T |
15237143 |
gttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtga |
15237197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 691
Target Start/End: Original strand, 34051972 - 34052026
Alignment:
| Q |
637 |
gttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtga |
691 |
Q |
| |
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||||| ||||||||||||||||| || || ||||| |||||||| |||||||||| |
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| T |
34051972 |
gttgtgaattgtagtttgtttaatcctacaccttctctttctgctatgattgtga |
34052026 |
T |
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