View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10155_low_13 (Length: 229)
Name: NF10155_low_13
Description: NF10155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10155_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 48158865 - 48158991
Alignment:
| Q |
96 |
aattatacttttagaagtaagcttatgaagaaatgtcattttatagaaactaccaccaaatgaattccattaagctttaatggatttgacatctggtggt |
195 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48158865 |
aattatacttttagaagtaagcttaccaagaaatgtcattttatataa-ctaccaccaaatgaattccattaagctttaatggatttgacatctggtggt |
48158963 |
T |
|
| Q |
196 |
tgagttgaataccagggacttttgatta |
223 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
48158964 |
tgagttgaataccagggactttttatta |
48158991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48158065 - 48158139
Alignment:
| Q |
1 |
ttttaaaagatagtataaagcaacttaaacataacaatctcgattagataatttcttaatcaaactgccaaactta |
76 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48158065 |
ttttaaaagatagtataaagcaacttaa-cataacaatgtcgattagataatttcttaatcaaactgccaaactta |
48158139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University