View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10155_low_2 (Length: 661)
Name: NF10155_low_2
Description: NF10155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10155_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Complemental strand, 14248343 - 14247700
Alignment:
| Q |
1 |
acaaaagacattgagtaaattctactgaattgaatattattggctttgtgcactcatcgtcacaatcgaacaaaattttcctagctagctaattcaaaca |
100 |
Q |
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| T |
14248343 |
acaaaagacattgagtaaattctactgaattgaatattcttggctttgtgcactcatcgtcaccatcgaacaaaattttcctagctagctaattcaaaca |
14248244 |
T |
|
| Q |
101 |
attggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttgagttc |
200 |
Q |
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| T |
14248243 |
attggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttgagttc |
14248144 |
T |
|
| Q |
201 |
ctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggtgcaacacttagtaca |
300 |
Q |
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| T |
14248143 |
ctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggcgcaacacttagtaca |
14248044 |
T |
|
| Q |
301 |
ggacgtgaacctacctacccagccacaagactcatctcagcattgagcactaaaaatataacaatatcagtacacattgtcacactactactgtttggtg |
400 |
Q |
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| T |
14248043 |
ggacgtgaacctacctccccagccacaagactcatctcagcattgagcactaaaaatataacaatatcagtacacattgtcacactactactgtttggtg |
14247944 |
T |
|
| Q |
401 |
ctttagaaaattcatgttgtgcaaacatgagacacaagacttactatcacacccataaacaaacatgacattagtgactcgaattgcaacaagaaccaca |
500 |
Q |
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| T |
14247943 |
ctttagaaaattcatgttgtgcaaacatgagacacaagatttactatcaaacccataaacaaaaatgacattagtgactcgaattgcaacaagaaccaca |
14247844 |
T |
|
| Q |
501 |
caatttcacaaatttaaaaggaaggaaagatcataattgtcctattcaaggtggtaagtaaactcacccataaggtgttcatacctcccacaaacaacat |
600 |
Q |
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| T |
14247843 |
cagtttcacaaatttaaaaggaaggaaagatcataattgtcctattcaaggtggtaagtaaactcacccataaggtgttcatacctcccacaaacaacat |
14247744 |
T |
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| Q |
601 |
tgatgatagaatcgccacactcacaattgaacaaggctgctatt |
644 |
Q |
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| T |
14247743 |
tgatgatagaatcgccacactcacaattgaacaaggctgctatt |
14247700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 14263398 - 14263349
Alignment:
| Q |
194 |
tgagttcctatcttagacttcatcttgctccatcccaataagggcgttga |
243 |
Q |
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| T |
14263398 |
tgagttcctagtttagacttcatgttgctccatcccaattaggtcgttga |
14263349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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