View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10155_low_6 (Length: 262)
Name: NF10155_low_6
Description: NF10155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10155_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47322507 - 47322249
Alignment:
| Q |
1 |
gtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnnt--------------taca |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
47322507 |
gtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagaaaaaaaattcttaataaaaaaattaca |
47322408 |
T |
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| Q |
87 |
ggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgct |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322407 |
ggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgct |
47322308 |
T |
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| Q |
187 |
tcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322307 |
tcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgt |
47322249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47337303 - 47337045
Alignment:
| Q |
1 |
gtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnnt--------------taca |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
47337303 |
gtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagaaaaaaaattcttaataaaaaaattaca |
47337204 |
T |
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| Q |
87 |
ggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgct |
186 |
Q |
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| T |
47337203 |
ggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgct |
47337104 |
T |
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| Q |
187 |
tcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgt |
245 |
Q |
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| T |
47337103 |
tcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgt |
47337045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 40337186 - 40337140
Alignment:
| Q |
195 |
ggtggtcggaactca-cgcggcggaggagtgttgaggaagaaggttg |
240 |
Q |
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| T |
40337186 |
ggtggtcggaactcagcgcgacggaggagggttgaggaagaaggttg |
40337140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24668269 - 24668461
Alignment:
| Q |
1 |
gtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnn------------ttacagg |
88 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
24668269 |
gtattggtaccttcaacatatatcaaacccataatcatcaattgatccatcatgatctaccaaccattgaagaaaaacaaaatcttaaaaaaattacagg |
24668368 |
T |
|
| Q |
89 |
tgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtt |
181 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
24668369 |
tgtgaggtgaagttgaagcaagctctggtattggagcttcgagaaggttgaggagggaaagtaaggaagcttttttgtagtggagattgtgtt |
24668461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 46950950 - 46950874
Alignment:
| Q |
171 |
gagattgtgtttc-gcttc-aacagt--ggtggtcggaactca-cgcggcggaggagtgttgaggaagaaggttgca |
242 |
Q |
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||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
46950950 |
gagattgtgtttccgcttccaacagtacggtggtcggaactcagcgcggcggaggagggttgaggaagaaggttgca |
46950874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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