View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10155_low_7 (Length: 261)
Name: NF10155_low_7
Description: NF10155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10155_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 4047032 - 4046786
Alignment:
| Q |
5 |
ctttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaacttaataacactcagaaatggatca |
104 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||| | || || | ||||| |||||| ||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
4047032 |
ctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaaaaaccaaatatacccttcaactcaataacaatcagacatggatca |
4046933 |
T |
|
| Q |
105 |
tatacacttcttcaccgatcaacttcaaccatgatggttcagaggttaaatccggtccattttccggtattattcgtatcgcggttgttcctgattccaa |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4046932 |
tatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtccattttccggtattattcgtatcgcggttgttcctgattccaa |
4046833 |
T |
|
| Q |
205 |
tggtgagaaaattcttgataaattcagctcttgttaccctatctctg |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4046832 |
tggtgagaaaattcttgataaatttagctcttgttaccctatctctg |
4046786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3753202 - 3753452
Alignment:
| Q |
1 |
ctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaacttaataacactcagaaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3753202 |
ctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaacttaataacactcagaaatgg |
3753301 |
T |
|
| Q |
101 |
atcatatacacttcttcaccgatcaacttcaaccatgatggttcagaggttaaatccggtccattttccggtattattcgtatcgcggttgttcctgatt |
200 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||| ||| || |||| ||||||||||||||| || |||||| || ||||| || |
|
|
| T |
3753302 |
atcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccattttccggtataatccgtatcatagtcattcctaata |
3753401 |
T |
|
| Q |
201 |
ccaatggtgagaaaattcttgataaattcagctcttgttaccctatctctg |
251 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3753402 |
ccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
3753452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University