View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10156_high_4 (Length: 383)

Name: NF10156_high_4
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10156_high_4
NF10156_high_4
[»] chr1 (11 HSPs)
chr1 (1-365)||(6521636-6522000)
chr1 (169-365)||(6506903-6507099)
chr1 (2-365)||(6512637-6513000)
chr1 (186-365)||(6517220-6517399)
chr1 (1-99)||(6517035-6517133)
chr1 (161-278)||(47778041-47778158)
chr1 (5-81)||(6506733-6506809)
chr1 (161-258)||(47788183-47788280)
chr1 (193-365)||(47760133-47760299)
chr1 (165-258)||(47781969-47782062)
chr1 (193-270)||(6523733-6523810)
[»] scaffold0341 (4 HSPs)
scaffold0341 (169-365)||(928-1124)
scaffold0341 (169-365)||(8581-8778)
scaffold0341 (5-81)||(758-834)
scaffold0341 (5-81)||(8411-8487)
[»] chr7 (1 HSPs)
chr7 (217-362)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (244-364)||(28856512-28856632)
chr5 (246-296)||(28831318-28831368)
chr5 (244-364)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 6522000 - 6521636
Alignment:
Q  1 ccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccn 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  6522000 ccatatatggtttggttattacttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatcca 6521901  T
Q  101 nnnnnnnnttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattga 200  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521900 aaaaaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattga 6521801  T
Q  201 acggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttg 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521800 acggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttg 6521701  T
Q  301 aggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521700 aggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 6521636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 365
Target Start/End: Original strand, 6506903 - 6507099
Alignment:
Q  169 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 268  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 6507002  T
Q  269 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  6507003 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 6507099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 6512637 - 6513000
Alignment:
Q  2 catatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnn 101  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||      
T  6512637 catatatagtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaa 6512736  T
Q  102 nnnnnnnttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaa 201  Q
           ||||  ||||| | ||| ||| | |||||||| || |||||   | ||||  | ||||||  ||||| | |||| || ||||| |||||||||    
T  6512737 taaatttttcagtactttatcaaattcatcttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaa 6512836  T
Q  202 cggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttga 301  Q
    |||| |||||| ||||||||||||   || || |  ||||| ||||| || |||||||| ||||||||| ||||||||||||  |||| |||||| || |    
T  6512837 cggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattcttta 6512936  T
Q  302 ggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
     ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  6512937 tgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtc 6513000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 186 - 365
Target Start/End: Original strand, 6517220 - 6517399
Alignment:
Q  186 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaaga 285  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| |||||||||| |||||  ||||||||| ||||||||||||      
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaac 6517319  T
Q  286 acagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
    ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| ||||||||||| ||||||||||||||    
T  6517320 acagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtc 6517399  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 6517035 - 6517133
Alignment:
Q  1 ccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517035 ccatatatggtttgattattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 47778158 - 47778041
Alignment:
Q  161 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcg 260  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| ||||||||||| |||      
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttccttttt 47778059  T
Q  261 gttttgacaatgttgtgt 278  Q
    |||| ||||| |||||||    
T  47778058 gtttggacaaagttgtgt 47778041  T

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Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 6506733 - 6506809
Alignment:
Q  5 atatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 81  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6506733 atatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 47788280 - 47788183
Alignment:
Q  161 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 258  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt 47788183  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 47760133 - 47760299
Alignment:
Q  193 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg 292  Q
    |||||||| ||||||||||| ||||||||||| |  ||||      |||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  293 aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
    |||  ||||| ||| |  | ||| | | | |||| |||||||||||||| |||||||| ||||||||||||||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtc 47760299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 47782062 - 47781969
Alignment:
Q  165 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 258  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt 47781969  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 6523810 - 6523733
Alignment:
Q  193 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaa 270  Q
    ||||| ||||||| ||| || ||||||||||||| |||||| |  ||||| ||||||||||||||| ||||| |||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaa 6523733  T

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Target: scaffold0341 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 365
Target Start/End: Original strand, 928 - 1124
Alignment:
Q  169 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 268  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 1027  T
Q  269 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  1028 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 1124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 169 - 365
Target Start/End: Original strand, 8581 - 8778
Alignment:
Q  169 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgg-ttttga 267  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttga 8680  T
Q  268 caatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 365  Q
    ||| |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  8681 caaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 758 - 834
Alignment:
Q  5 atatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 81  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  758 atatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T

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Target: scaffold0341; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 8411 - 8487
Alignment:
Q  5 atatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 81  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8411 atatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  217 aacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaat 316  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||   |||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat 722207  T
Q  317 cattgagtttgacatctcctctacatagtccaatcgcgtttacttt 362  Q
    ||||||| || |||||||||||||||||||||| | ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 364
Target Start/End: Original strand, 28856512 - 28856632
Alignment:
Q  244 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 343  Q
    |||||||||||||||  |||| |||||| |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28856512 ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28856611  T
Q  344 gtccaatcgcgtttactttgt 364  Q
     ||| || |||| ||||||||    
T  28856612 atcctatggcgtatactttgt 28856632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 28831318 - 28831368
Alignment:
Q  246 aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatt 296  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |||||||    
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaatt 28831368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 364
Target Start/End: Original strand, 28861789 - 28861909
Alignment:
Q  244 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 343  Q
    ||||||||||||||| ||||  |||| | |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28861789 ccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28861888  T
Q  344 gtccaatcgcgtttactttgt 364  Q
     ||| || |||| ||||||||    
T  28861889 atcctatggcgtatactttgt 28861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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