View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_high_6 (Length: 374)
Name: NF10156_high_6
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 53999272 - 53999605
Alignment:
| Q |
12 |
gagatgaagagaatggtgatgatcacttgacaagattgaactgttttggtttgtaacacaattcaattttggtctcaaataatataggagatgttgattt |
111 |
Q |
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| T |
53999272 |
gagatgaagagaatggtgatgatcacttgacaagattgaactgttttggtttgtaacacaattcaattttggtctcaaataatataggagatgttgattt |
53999371 |
T |
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| Q |
112 |
gcaactcagctgatgattgaggtttggttgttcgttaactgcaatttgtattgagttcattgtacaaattcaagaggttgatgagccatgagacataatt |
211 |
Q |
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| T |
53999372 |
gcaactcagctgatgattgaggtttggttgttcgttaactgcaatttgtattgagttcattgtacaaattcaagaggttgatgagccatgagacataatt |
53999471 |
T |
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| Q |
212 |
ggaagattggtgtttttggagctcggcaaaccagaaattcaagagacaaaattgcagccggcttagactcataatatgttgtaaaaattgagtcaattgg |
311 |
Q |
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| T |
53999472 |
ggaagattggtgtttttggagctcggcaaaccagaaattctagagacaaaattgcagccggcttagactcataatatgttgtaaaaattgagtcaattgg |
53999571 |
T |
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| Q |
312 |
ccaaaccagggattatgagttttcttgagtatat |
345 |
Q |
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| T |
53999572 |
ccaaaccagggattatgagttttcttgagtatat |
53999605 |
T |
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