View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_1 (Length: 445)
Name: NF10156_low_1
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 2665117 - 2665529
Alignment:
| Q |
14 |
gatgaattgcggtggagttatggtatcttctgcttttgaaggtattggaaacaatgttgttaaatggaaacaagtagcaagaagtagaaagaagaactca |
113 |
Q |
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| T |
2665117 |
gatgaattgtggtggagttatggtatcttctgcttttgaaggtattggaaacaatgttgttaaatggaaacaagtagcaagaagtagaaagatgaactca |
2665216 |
T |
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| Q |
114 |
gttttctccatgattagttttttatccttcacnnnnnnnnnnnnnnnnnnngtacttatataaagaaaatctgcattatttaatcatactactgttctta |
213 |
Q |
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| T |
2665217 |
gttttctccatgattagttttttatccttcacattattattattattattagtacttatataaagaaaatctgcattatttaatcatactactgttctta |
2665316 |
T |
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| Q |
214 |
aaatcttgtgttgatgaataggagtttaattgactggtttatcttaaattaagcaaaagaattgtttaattgggagtaggtgtgtatcttgagggtccag |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2665317 |
aaatcttgtgttgatgaataggagtttaattgaccagtttaacttaaattaagcaaaagaattgtataattgggagtaggtgtgtatcttgagggtccag |
2665416 |
T |
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| Q |
314 |
ttctttttcttttcttatggaaagtcacataaaaggacattaggtgattaggttcaataacaccgactgaactacgtaattgagcaataatatttgatgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
2665417 |
ttctttttcttttcttatggaaagtcacataaaaggacattaggtgattaggttcaataacaccaactgaactacgtaattaagcaataatatttgatgg |
2665516 |
T |
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| Q |
414 |
agacccacccgcg |
426 |
Q |
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| T |
2665517 |
agacccacccgcg |
2665529 |
T |
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