View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_12 (Length: 323)
Name: NF10156_low_12
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 10092007 - 10091923
Alignment:
| Q |
223 |
actaagaagatcataaaagtttaattgctacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatata |
307 |
Q |
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| T |
10092007 |
actaagaagatcataaaagtttaattactacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatata |
10091923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 10092051 - 10091994
Alignment:
| Q |
143 |
aaaagaacatatatattaatggtgtacaatttgactgaactataactaagaagatcat |
200 |
Q |
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| T |
10092051 |
aaaagaacatatatattaatggtgtacaatttgactgaactataactaagaagatcat |
10091994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 10097382 - 10097297
Alignment:
| Q |
222 |
gactaagaagatcataaaagtttaattgctacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatata |
307 |
Q |
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| T |
10097382 |
gactaagaaaataataaaagtttatgtattacctatattcatggctggtggaagtgcatattgaaggagaagtacaaactgatata |
10097297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 30669953 - 30670009
Alignment:
| Q |
251 |
tacctatgctcatagctggaggaagtgcatattgaaggagaagaataaactgatata |
307 |
Q |
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| T |
30669953 |
tacctatattcatagctggtggaagtgcatattgaagtagaagtacaaactgatata |
30670009 |
T |
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