View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_13 (Length: 301)
Name: NF10156_low_13
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 108 - 285
Target Start/End: Original strand, 1155306 - 1155483
Alignment:
| Q |
108 |
cctaattaccttagcgatgttaaggtagaagaagagaggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcca |
207 |
Q |
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| T |
1155306 |
cctaattaccttagcgatgttaaggtagaagaagagtggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcca |
1155405 |
T |
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| Q |
208 |
ttgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttctttcatctcaccggcggttagaactgcaatc |
285 |
Q |
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| T |
1155406 |
ttgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttctttcatctcaccggcggttagaactgcaatc |
1155483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1155199 - 1155260
Alignment:
| Q |
1 |
atcattatccagcttcaagtgtttctgaatcagaaagaaacacgaaattcataatcagaaat |
62 |
Q |
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| T |
1155199 |
atcattatccagcttcaagtgtttctgaatcagaaagaaacacgaaatccataatcagaaat |
1155260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38665027 - 38664985
Alignment:
| Q |
1 |
atcattatccagcttcaagtgtttctgaatcagaaagaaacac |
43 |
Q |
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| T |
38665027 |
atcattatccagcttcaagtgtttctgaatcagaaagaaacac |
38664985 |
T |
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