View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_17 (Length: 275)
Name: NF10156_low_17
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 33410946 - 33410702
Alignment:
| Q |
18 |
tttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410946 |
tttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttctatttccatggttttactttcatcagttgcaattgcaactgatc |
33410847 |
T |
|
| Q |
118 |
acattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaata |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410846 |
acattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaata |
33410747 |
T |
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| Q |
218 |
aaaggaaaaaacaaatatccatttggcttcatatttaattgttta |
262 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
33410746 |
aaaggaaaaaacaaatatccatttggtttcatattcaattgttta |
33410702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 33424861 - 33424633
Alignment:
| Q |
18 |
tttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatc |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424861 |
tttccaaaatcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatc |
33424762 |
T |
|
| Q |
118 |
acattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaata |
217 |
Q |
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| T |
33424761 |
acattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagttttccgtgttggagacaacttaggtatgta--a |
33424664 |
T |
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| Q |
218 |
aaaggaaaaaacaaatatccatttggcttca |
248 |
Q |
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|| ||||||||||||| | ||||||| |||| |
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| T |
33424663 |
aagggaaaaaacaaattttcatttggtttca |
33424633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 33416793 - 33416563
Alignment:
| Q |
18 |
tttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaat---tgcaactg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33416793 |
tttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgctgcaactg |
33416694 |
T |
|
| Q |
115 |
atcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgta |
214 |
Q |
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|| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33416693 |
attatattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagtttttcgtgttggagacaacctaggtatg-- |
33416596 |
T |
|
| Q |
215 |
ataaaaggaaaaaacaaatatccatttggcttca |
248 |
Q |
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||||||||||||| |||| ||||||||| |||| |
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| T |
33416595 |
-taaaaggaaaaaataaatgtccatttggtttca |
33416563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 33436903 - 33436766
Alignment:
| Q |
75 |
atttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctc |
174 |
Q |
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||||| |||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||| |
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| T |
33436903 |
atttcaatggttttgctttcttcagttgcaatggcagccgatcacattgttggtgatgacaagggttggactgttgattttaactatactcagtggactc |
33436804 |
T |
|
| Q |
175 |
aagacaaagtttttcgtgttggagacaatctaggtatg |
212 |
Q |
| |
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| ||||| ||||| |||||||| ||||| || |||||| |
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| T |
33436803 |
aggacaaggttttccgtgttggtgacaaccttggtatg |
33436766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 33427829 - 33427931
Alignment:
| Q |
113 |
tgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatg |
212 |
Q |
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|||||| ||||| ||||||||||| || |||||| || | || |||||||||| ||||| |||||||||||||||||||||| |||||||| |||||| |
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| T |
33427829 |
tgatcatattgtgggtgatgacaatggctggactattaacttcaattacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatg |
33427928 |
T |
|
| Q |
213 |
taa |
215 |
Q |
| |
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||| |
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| T |
33427929 |
taa |
33427931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 24984670 - 24984844
Alignment:
| Q |
25 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
124 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
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| T |
24984670 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24984766 |
T |
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| Q |
125 |
tggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaa |
202 |
Q |
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|||||||| ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
24984767 |
gggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaa |
24984844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 24990500 - 24990674
Alignment:
| Q |
25 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
124 |
Q |
| |
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|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
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| T |
24990500 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24990596 |
T |
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| Q |
125 |
tggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaa |
202 |
Q |
| |
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|||||||| ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
24990597 |
gggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaa |
24990674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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