View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10156_low_18 (Length: 273)

Name: NF10156_low_18
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10156_low_18
NF10156_low_18
[»] chr1 (9 HSPs)
chr1 (1-256)||(6521745-6522000)
chr1 (1-99)||(6517035-6517133)
chr1 (2-99)||(6512637-6512734)
chr1 (5-81)||(6506733-6506809)
chr1 (161-254)||(47778065-47778158)
chr1 (169-256)||(6506903-6506990)
chr1 (161-256)||(47788185-47788280)
chr1 (186-253)||(6517220-6517287)
chr1 (165-256)||(47781971-47782062)
[»] scaffold0341 (4 HSPs)
scaffold0341 (5-81)||(758-834)
scaffold0341 (5-81)||(8411-8487)
scaffold0341 (169-256)||(928-1015)
scaffold0341 (169-256)||(8581-8668)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6522000 - 6521745
Alignment:
Q  1 ccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccn 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  6522000 ccatatatggtttggttattacttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatcca 6521901  T
Q  101 nnnnnnnnttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattga 200  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521900 aaaaaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattga 6521801  T
Q  201 acggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 256  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6521800 acggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttctt 6521745  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 6517035 - 6517133
Alignment:
Q  1 ccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517035 ccatatatggtttgattattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 6512637 - 6512734
Alignment:
Q  2 catatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 99  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||    
T  6512637 catatatagtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatcc 6512734  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 6506733 - 6506809
Alignment:
Q  5 atatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 81  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6506733 atatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 47778158 - 47778065
Alignment:
Q  161 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 254  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| |||||||||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 6506903 - 6506990
Alignment:
Q  169 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 256  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 6506990  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 47788280 - 47788185
Alignment:
Q  161 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 256  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctt 47788185  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 6517220 - 6517287
Alignment:
Q  186 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgctt 253  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| ||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 47782062 - 47781971
Alignment:
Q  165 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 256  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctt 47781971  T

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Target: scaffold0341 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 758 - 834
Alignment:
Q  5 atatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 81  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  758 atatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T

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Target: scaffold0341; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 8411 - 8487
Alignment:
Q  5 atatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 81  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8411 atatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

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Target: scaffold0341; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 928 - 1015
Alignment:
Q  169 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 256  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 8581 - 8668
Alignment:
Q  169 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 256  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 8668  T

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