View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_20 (Length: 270)
Name: NF10156_low_20
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 34640527 - 34640778
Alignment:
| Q |
1 |
ggttttaagttgcatatgcattgccatccttaatattgcaggcaaatgtggctgatgtagcatcaataacaactaactattattaatatcggtcattaag |
100 |
Q |
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| T |
34640527 |
ggttttaagatgcatatgcattgccatccttaatattgcaggcaaatgtggctgatgtagcatcaataacaattaactatta---atatcggtcattaag |
34640623 |
T |
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| Q |
101 |
aaagtaaaa-aactcgagtggttgtggttgtgaaccgcaatttagtgtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgattt |
199 |
Q |
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| T |
34640624 |
aaagtaaaaaaactcgagtggttgtggttgtgaaccgcaatttagtgtatgtttgatatcacaacgaatatgtcagaatcacgatgattcgccgtgattt |
34640723 |
T |
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| Q |
200 |
tgaagaacctacaaaatgtacctttaaaaaatcacggtgtgttaccgtgattctt |
254 |
Q |
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| T |
34640724 |
tgaagaacctacaaaatgtacctttaaaaaatcacggtgtgttaccgtgattctt |
34640778 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 45266491 - 45266564
Alignment:
| Q |
146 |
gtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgattttgaagaacctacaaaatgta |
219 |
Q |
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| T |
45266491 |
gtatgtttggtatcacaatgagtatgttagaattacgttgatccgccgtaattttgtagaagctgcaaaatgta |
45266564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 34197912 - 34197857
Alignment:
| Q |
145 |
tgtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgatttt |
200 |
Q |
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| T |
34197912 |
tgtatgtttgatatcacggtggatatgtcagaatcacgatggatcaccgtgatttt |
34197857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 5276939 - 5277015
Alignment:
| Q |
143 |
agtgtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgattttgaagaacctacaaaatgta |
219 |
Q |
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| T |
5276939 |
agtgtttgtttggtatcacagtggatatgtcagaatcacggtgatccatcatgattttgtagaaactacaaagtgta |
5277015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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