View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_23 (Length: 253)
Name: NF10156_low_23
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_23 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 33410680 - 33410455
Alignment:
| Q |
15 |
ttataattaacttttgtttagatgaacttgtattaatctaatatgaactaattcagttttatctccttctttttagttttcaactatgacccttcaaggc |
114 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| || |||||| |
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| T |
33410680 |
ttataattaacttttgtttagatgaacatgtattaatctaatatgaactaattttgtttcatctctttctttttagttttcaactatgatccggcaaggc |
33410581 |
T |
|
| Q |
115 |
acaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410580 |
acaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaac |
33410481 |
T |
|
| Q |
215 |
agaaggaagaaagtggtatgtctgtg |
240 |
Q |
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||||||||||||||||||||| |||| |
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| T |
33410480 |
agaaggaagaaagtggtatgtttgtg |
33410455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 33424582 - 33424357
Alignment:
| Q |
15 |
ttataattaacttttgtttagatgaacttgtattaatctaatatgaactaattcagttttatctccttctttttagttttcaactatgacccttcaaggc |
114 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| || |||||| |
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| T |
33424582 |
ttataattaacttttgtttagatgaacatgtattaatctaatatgaactaattttgtttcatcttcttctttttagttttcaactatgatccggcaaggc |
33424483 |
T |
|
| Q |
115 |
acaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424482 |
acaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaac |
33424383 |
T |
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| Q |
215 |
agaaggaagaaagtggtatgtctgtg |
240 |
Q |
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||||||||||||||||||||| |||| |
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| T |
33424382 |
agaaggaagaaagtggtatgtttgtg |
33424357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 33416460 - 33416304
Alignment:
| Q |
84 |
tttttagttttcaactatgacccttcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcacttt |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
33416460 |
tttttagttttcaactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcacttt |
33416361 |
T |
|
| Q |
184 |
ctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtctgtg |
240 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
33416360 |
ctaccggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtg |
33416304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 33428024 - 33428232
Alignment:
| Q |
33 |
tagatgaacttgtattaatctaatatgaactaattcagttttatctccttc-tttttagttttcaactatgacccttcaaggcacaatgttttcaaagta |
131 |
Q |
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|||||||||| |||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33428024 |
tagatgaactggtattaatctaatacgaactaattacgttttatcttctttatttttagttttcaactatgacccttcaagacacaatgttttcaaagtg |
33428123 |
T |
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| Q |
132 |
aatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggt |
231 |
Q |
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|| |||||| ||||||| || ||||||||||||||| |||| |||||||||||||| ||||||||||| |||| ||||| || |||| || |||||||| |
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| T |
33428124 |
aacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaagactgaagaaacaaagtggt |
33428223 |
T |
|
| Q |
232 |
atgtctgtg |
240 |
Q |
| |
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|||| |||| |
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|
| T |
33428224 |
atgtttgtg |
33428232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 33436626 - 33436509
Alignment:
| Q |
123 |
ttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaa |
222 |
Q |
| |
|
|||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
33436626 |
ttcaaagtgaatggtacactttttaaggactgcacttttccaccaaaaaatgaagcactctctacgggaaaggatatcattcaactaaaaacagaaggaa |
33436527 |
T |
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| Q |
223 |
gaaagtggtatgtctgtg |
240 |
Q |
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||||||||||||| |||| |
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| T |
33436526 |
gaaagtggtatgtttgtg |
33436509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 5180 - 5268
Alignment:
| Q |
152 |
ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtctgtg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
5180 |
ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtg |
5268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 24985049 - 24985176
Alignment:
| Q |
113 |
gcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaa |
212 |
Q |
| |
|
||||||||| |||||||| |||| | ||||||||||||||||||||||||| || |||||||||||||||| || |||||||| | |||||||| ||| |
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| T |
24985049 |
gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa |
24985148 |
T |
|
| Q |
213 |
acagaaggaagaaagtggtatgtctgtg |
240 |
Q |
| |
|
|| |||||||||||||||||||| |||| |
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| T |
24985149 |
accgaaggaagaaagtggtatgtatgtg |
24985176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 24990879 - 24991006
Alignment:
| Q |
113 |
gcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaa |
212 |
Q |
| |
|
||||||||| |||||||| |||| | ||||||||||||||||||||||||| || |||||||||||||||| || |||||||| | |||||||| ||| |
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|
| T |
24990879 |
gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa |
24990978 |
T |
|
| Q |
213 |
acagaaggaagaaagtggtatgtctgtg |
240 |
Q |
| |
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|| |||||||||||||||||||| |||| |
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|
| T |
24990979 |
accgaaggaagaaagtggtatgtatgtg |
24991006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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