View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_24 (Length: 240)
Name: NF10156_low_24
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 29942644 - 29942867
Alignment:
| Q |
17 |
actgcccccatatatggaattgttatcttgggnnnnnnnnnnnnnactcaacgtttctctttgttcttcttgttttgacgatagtaattgcttgagtaca |
116 |
Q |
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| T |
29942644 |
actgcccccatatatggaattgttatcttgggtttttacttttttactcaacgtttctctttgttcttcttgtttggacgatagtaattgcttgagtaca |
29942743 |
T |
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| Q |
117 |
aacaagtttttaaacttaggtcaatttgacagtccatactgcatcatgttttctgtgacttttgcatgcattcatagttcatttatatcaaatttattat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29942744 |
aacaagtttttaaacttaggtcaatttgacagtccatactgcatcatgttttctgtgacttttgcatgcattcatagttcatttatatcaaatttattat |
29942843 |
T |
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| Q |
217 |
gttctttgtgtggttttatttagt |
240 |
Q |
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||||||||| |||||||||||||| |
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| T |
29942844 |
gttctttgtttggttttatttagt |
29942867 |
T |
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