View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10156_low_26 (Length: 228)
Name: NF10156_low_26
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 50373633 - 50373810
Alignment:
| Q |
35 |
accacattgccttgctaatttcaaactttccaacatgccctatagctcatcaacatacgcagtgcagcttcgaaaaatcacttaaccattcaccttcatc |
134 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373633 |
accatattgccttgctaattccaaactttccaacatgccctatagctcatcaacatacgcagtgcagcttcgaaaaatcacttaaccattcaccttcatc |
50373732 |
T |
|
| Q |
135 |
tcttcttaatagtcctccctcccaccatgactttcgctgtctgaattaattgtaatctatcctgccaaaggtggctgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373733 |
tcttcttaatagtcctccctcccaccatgactttcgctgtctgaattaattgtaatctatcctgccaaaggtggctgc |
50373810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University