View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10156_low_28 (Length: 215)
Name: NF10156_low_28
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4013567 - 4013757
Alignment:
| Q |
1 |
gccattgaattggaacaacttcactctgaataatctttcttcgtctctagaaccttgaatatcacaataagggaaacacaaggttattaccggagcgaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
4013567 |
gccattgaattggaacaatttcacacggaacaatctttcttcgtctctagaaccttgaacatcacaataagggaaacacaagatta-taccgga--gaaa |
4013663 |
T |
|
| Q |
101 |
aagaaaagatattatataattgattgaagctagaagtttatatatactctctacaagaaattaaaattaaatgttcatagccataaggagaggaa |
195 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||| |
|
|
| T |
4013664 |
gagaaaagaaactatatgattgattgaagctagaacattatatatactctctacaagaaattaaaatt-aatagtcataaccataaggaggggaa |
4013757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 3992078 - 3992198
Alignment:
| Q |
82 |
ggttattaccggagcgaaaaagaaaagatattatataattgattgaagctagaagtttatatatactctctacaagaaattaaaattaaatgttcatagc |
181 |
Q |
| |
|
||||||| ||||||||||| |||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3992078 |
ggttatttccggagcgaaagagaaaagaaactatatggttgattgaagctagaactttatatatactctctacaagaaattaaaattaaatggtcatagt |
3992177 |
T |
|
| Q |
182 |
c--ataaggagaggaaagagg |
200 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
3992178 |
catataaggagaggaaagagg |
3992198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3991260 - 3991348
Alignment:
| Q |
1 |
gccattgaattggaacaacttcactctgaataatctttcttcgtctctagaaccttgaatatcacaataagggaaacacaaggttatta |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3991260 |
gccattgaattggaacaacttcactctgaacaatctttcttcgtctgtagaaccttgaatatatcaataagggaaacacaaggttatta |
3991348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4005321 - 4005510
Alignment:
| Q |
1 |
gccattgaattggaacaacttcactctgaataatctttcttcgtctctagaaccttgaatatcacaataagggaaacacaaggttattaccggagcgaaa |
100 |
Q |
| |
|
||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | || |||| |
|
|
| T |
4005321 |
gccattgaactggaacaagtgcactctgaacaatctttcttcgtctctagaaccttgaataacgcaataagggaaacacaaggttattatcagaaagaaa |
4005420 |
T |
|
| Q |
101 |
aagaaaagatattatataattgattgaagctagaagtttatatatactctctacaagaaattaaaattaaatgttcatagccataaggagaggaa |
195 |
Q |
| |
|
||||||| || | |||| |||||| ||||| | |||| ||||| ||||||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
4005421 |
tcgaaaagaaat--gaaaatt--ttgaagatagaactatataaatactaactacaagaaatcaaaatt-aatggtcatagccataaggagaggaa |
4005510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4027787 - 4027895
Alignment:
| Q |
1 |
gccattgaattggaacaacttcactctgaataatctttcttcgtctctagaaccttgaatatcacaataagggaaacacaaggttattaccggagcgaaa |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||||||||||| |||| ||| || ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
4027787 |
gccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaa |
4027886 |
T |
|
| Q |
101 |
aagaaaaga |
109 |
Q |
| |
|
|||||||| |
|
|
| T |
4027887 |
gagaaaaga |
4027895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3951088 - 3950984
Alignment:
| Q |
1 |
gccattgaattggaacaacttcactctgaataatctttcttcgtctctagaaccttgaatatcacaataagggaaacacaaggttattaccggagcgaaa |
100 |
Q |
| |
|
||||||| |||||||||| | |||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
3951088 |
gccattggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaacgtcacaataagggaaacacaaggttattaacggaacgaaa |
3950991 |
T |
|
| Q |
101 |
aagaaaa |
107 |
Q |
| |
|
|||||| |
|
|
| T |
3950990 |
cagaaaa |
3950984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 13400529 - 13400594
Alignment:
| Q |
27 |
tgaataatctttcttcgtctctagaaccttgaatatcacaataagggaaacacaaggttattaccg |
92 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
13400529 |
tgaacaatctttctttgtctcaagaaccttgaacatcgcaataagggaaacacaaggttattaccg |
13400594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University