View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_3 (Length: 399)
Name: NF10156_low_3
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 31543652 - 31543285
Alignment:
| Q |
19 |
catcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543652 |
catcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaat |
31543553 |
T |
|
| Q |
119 |
aaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattcttgtctcaggcgtggcttaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
31543552 |
aaggtatttgcgactcaataaccaaggggcgtttagtgggtttaccggtacaattgatgttatatcatctatgaggttcttgtctcaggcgtggcttaac |
31543453 |
T |
|
| Q |
219 |
aacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattccaatcaattagttggtttggttccacatt |
318 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543452 |
aacaacatgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattccaatcaattagttggtttggttccacatt |
31543353 |
T |
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| Q |
319 |
ctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggaccgatacct |
386 |
Q |
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| T |
31543352 |
cgctatgcactctctctagcttgaagaacatctctttggacatcaattttcttcaaggaccgatacct |
31543285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 31550994 - 31551365
Alignment:
| Q |
19 |
catcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaat |
118 |
Q |
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||||||| ||||| | |||||||| | ||||||||||||| ||| |||||||||||| | ||||||| ||||||| |||||||| ||||| | | |
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| T |
31550994 |
catcagacgtgttcgattggtttccaagattgcatactgtttctctctctcacaacaacatccgtggaacacttcccctgtctcttggaaaatctgtagt |
31551093 |
T |
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| Q |
119 |
aaggtatttgcgactcaataa-ccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattcttgtctcaggcgtggcttaa |
217 |
Q |
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||||||||| |||||||| || ||||| || | |||||||| ||||||||||| || ||||| || |||||||| |||||||| ||||||||||| |
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| T |
31551094 |
aaggtatttacgactcaacaaaccaagacagattgaatgggtttacgggtacaattgaagtgatatcgtctatgagatttttgtctcaagcgtggcttaa |
31551193 |
T |
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| Q |
218 |
caacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattccaatcaattagttggtttggttccacat |
317 |
Q |
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| T |
31551194 |
caacaacgcgttcactggtacaattcctaacatgtcaaattccactcatttgtttgatctccaacttcactcaaatggtttaataggtttggttccatct |
31551293 |
T |
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| Q |
318 |
tctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggaccgatacctatg |
389 |
Q |
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| T |
31551294 |
tcgttgttctctctccctagcttgaccaacatctctttggacaacaataatcttgaaggaccaatacctatg |
31551365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 31534925 - 31534749
Alignment:
| Q |
99 |
tctcttggggaatcttcaataaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattct |
198 |
Q |
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||||||||| ||||| | ||| ||||||||| ||||| ||||||||| | ||||||||| |||| |||||| ||||||||||||||||| | |
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| T |
31534925 |
tctcttgggaaatctaaagtaaagtatttgcggttcaatgaccaaggggaatacagtgggttttcgggtagaattgacgttatatcatccatgagtaatt |
31534826 |
T |
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| Q |
199 |
tgtctcaggcgtggcttaacaacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgat |
275 |
Q |
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| T |
31534825 |
tgtctcaggcgtggcttcagaacaacacattcacaggttcaatacccaacatgtccaattgcactcatttgtttgat |
31534749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 32357526 - 32357578
Alignment:
| Q |
327 |
actctctctagcttgaagaacatctctttggacaacaattttcttcaaggacc |
379 |
Q |
| |
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|||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32357526 |
actctccctaacttgaagaacatctctttggaccacaattttcttcaaggacc |
32357578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 379
Target Start/End: Complemental strand, 32350958 - 32350881
Alignment:
| Q |
302 |
tggtttggttccacattctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggacc |
379 |
Q |
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||||||| |||||| |||| | | ||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
32350958 |
tggtttgattccaccttctttgttcactctccctaacttgaagagcatctctttggaccacaattttctttaaggacc |
32350881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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