View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_4 (Length: 393)
Name: NF10156_low_4
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 42555905 - 42556149
Alignment:
| Q |
5 |
aacactcacctcgggggagacgacttggatagtaggatggtgaaatactttgcaaagtactttgatagtaggatgtttacattatctgtatgttttagct |
104 |
Q |
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| T |
42555905 |
aacactcacctcgagggagacgacttggatagtaggatggtgaaatactttgcagagtactttgatagtaggatgtttacattatctgtatgttttagct |
42556004 |
T |
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| Q |
105 |
cataagttctcttaattagttaatgaatctaaccaagtttgcctgcaaggcattacttgaatgagtgaagatgtgttagtttgtatcaccttacaagtga |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |
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| T |
42556005 |
cataagttctcttaattggttaatgaatctaaccaagtttgcctgcaaggcattacttgaatgagtgaagatgtgtcagtttgtatcaccttataagtaa |
42556104 |
T |
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| Q |
205 |
atgagtagagatgtgtcttcaaatttgaaagtggatatgactttg |
249 |
Q |
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| T |
42556105 |
atgagtgaagatgtgtcttcaaatttgaaagtggatatgactttg |
42556149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 42556139 - 42556245
Alignment:
| Q |
274 |
atatgactttgtttaagagggggtgatgtaatataaggcaatgaaagatgttgtcttctattttttagtgaagtatttatcactggggatttttatcgtg |
373 |
Q |
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| T |
42556139 |
atatgactttgtttaagagggggtgatgtaatataaggcaatgaaagatgttgtcttctattttttagtgaagtatttatcactggggatttttatcgtg |
42556238 |
T |
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| Q |
374 |
atgtcca |
380 |
Q |
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|||||| |
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| T |
42556239 |
ttgtcca |
42556245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28220037 - 28219984
Alignment:
| Q |
1 |
tggaaacactcacctcgggggagacgacttggatagtaggatggtgaaatactt |
54 |
Q |
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| T |
28220037 |
tggaaacactcacctcgggggagaggactttgatagtaggatggtgaactactt |
28219984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 3147382 - 3147326
Alignment:
| Q |
2 |
ggaaacactcacctcgggggagacgacttggatagtaggatggtgaaatactttgca |
58 |
Q |
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| T |
3147382 |
ggaaacacccaccttgggggagaggactttgataataggatggtgaactactttgca |
3147326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8646996 - 8646951
Alignment:
| Q |
1 |
tggaaacactcacctcgggggagacgacttggatagtaggatggtg |
46 |
Q |
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| T |
8646996 |
tggaaacactcacctcggaggagaggactttgatagtagaatggtg |
8646951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14703527 - 14703472
Alignment:
| Q |
1 |
tggaaacactcacctcgggggagacgacttggatagtaggatggtgaaatactttg |
56 |
Q |
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|||||||||||||||||||||||| ||||| |||| || |||||||| ||||||| |
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| T |
14703527 |
tggaaacactcacctcgggggagaggacttcgataacagaatggtgaactactttg |
14703472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43744935 - 43744882
Alignment:
| Q |
1 |
tggaaacactcacctcgggggagacgacttggatagtaggatggtgaaatactt |
54 |
Q |
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|||||||||||||||||| ||||| || || |||| |||||||||||| ||||| |
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| T |
43744935 |
tggaaacactcacctcggaggagaggattttgataataggatggtgaactactt |
43744882 |
T |
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