View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10156_low_5 (Length: 392)
Name: NF10156_low_5
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10156_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 32528231 - 32528606
Alignment:
| Q |
1 |
caagaaatacaaccacaaactaaagatttcaaactgaacctacctagatggggnnnnnnnnnccaaaaccactgacgtaaccgccagagttctgaaataa |
100 |
Q |
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| T |
32528231 |
caagaaatacagccacaaactaaagatttcaaactgaacctacctagatggggtttttctt-ccaaaaccactgacgtaaccgccagagttctgaaataa |
32528329 |
T |
|
| Q |
101 |
caatggacaaacattcatcttctcgagtcaacattcatcatcgcgagaaaacctaaaagtagtgatggccttgcacatccctatttgtatagttgttgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528330 |
caatggacaaacattcatcttctcgagtcaacattcatcatcgcgagaaaacctaaaagtagtgatggccttgcacatccctatttgtatagttgttgga |
32528429 |
T |
|
| Q |
201 |
actagtatatagtatatactcgtgtttttctctaatgaaagtctttcattggatgaagtttctattgggtaaaagattccctattgaaaatgcatgctct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528430 |
actagtatatagtatatactcgtgtttttctctaatgaaagtcttgaataggatgaagtttctattgggtaaaagattccctattgaaaatgcatgctct |
32528529 |
T |
|
| Q |
301 |
aattcacgtcatcatttcattcatgcatactcatttttccaataaataacagcttagttgaattacttgaagtaatt |
377 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528530 |
aattcacgtcatcatttcatttatgcatactcatttttccaataaataacagcttagttgaattacttgaagtaatt |
32528606 |
T |
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