View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10156_low_7 (Length: 381)

Name: NF10156_low_7
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10156_low_7
NF10156_low_7
[»] chr7 (4 HSPs)
chr7 (1-273)||(24184293-24184562)
chr7 (280-324)||(24184203-24184247)
chr7 (87-153)||(47020701-47020767)
chr7 (95-153)||(20348147-20348205)
[»] chr5 (8 HSPs)
chr5 (1-75)||(5913137-5913211)
chr5 (87-153)||(38485031-38485097)
chr5 (87-154)||(35418702-35418769)
chr5 (87-157)||(36101620-36101690)
chr5 (87-154)||(5919471-5919538)
chr5 (87-153)||(5912536-5912602)
chr5 (87-153)||(6749877-6749943)
chr5 (87-153)||(41195486-41195552)
[»] chr4 (8 HSPs)
chr4 (1-75)||(39224832-39224906)
chr4 (87-153)||(40055495-40055561)
chr4 (87-153)||(39218894-39218960)
chr4 (87-153)||(234832-234898)
chr4 (87-153)||(39225420-39225486)
chr4 (87-153)||(40056398-40056464)
chr4 (87-153)||(47114628-47114694)
chr4 (1-75)||(40055353-40055426)
[»] chr1 (5 HSPs)
chr1 (87-153)||(16861719-16861785)
chr1 (87-153)||(49542637-49542703)
chr1 (87-153)||(19420003-19420069)
chr1 (87-153)||(40769017-40769083)
chr1 (87-153)||(46432848-46432914)
[»] chr3 (6 HSPs)
chr3 (87-154)||(8545406-8545473)
chr3 (87-154)||(10566179-10566246)
chr3 (87-153)||(10569430-10569496)
chr3 (87-153)||(29674113-29674179)
chr3 (1-75)||(10569287-10569361)
chr3 (118-152)||(20282709-20282743)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 24184562 - 24184293
Alignment:
Q  1 tctttagttcttcttaagtacttaagaatagtcttaaccactttccaatgtttctcatctgggtttgcttgatatatatatcgactagataataaatatt 100  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24184562 tctttagttcttcttaagtacttaagaatagtctta-ccgctttccaatatttctcacatgggtttgcttgatatatatatcgactagataataaatatt 24184464  T
Q  101 tattaagtccaaagtttgttacataattgattggatcttgggcatctccaacattattcatcaacgattcaaatacatatgttaaggtactgcttaaacc 200  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||    
T  24184463 tattaagtt-aaagtttgttacataattgattggatcttgagcatctccaacattattcatcaacgattcgaagacat-tgttaaggtactgctttaacc 24184366  T
Q  201 accaccatcacatagaaactaacaagtagnnnnnnnnnnnnnnaataataaatgatacttaaagcaaatttaa 273  Q
    ||||||||||||||||| || || |||||              ||||||||||||||||||||||||||||||    
T  24184365 accaccatcacatagaacctgaccagtagtttttttgttttttaataataaatgatacttaaagcaaatttaa 24184293  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 24184247 - 24184203
Alignment:
Q  280 ttttgtctctacatattgcgcttttgttgtttataaaatcgaaca 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24184247 ttttgtctctacatattgcgcttttgttgtttataaaatcgaaca 24184203  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 47020701 - 47020767
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| || ||| || |||||||||||| |||||||||||||||||||||||    
T  47020701 agataatgaatatttattaattctaaaattggttacataattggttggatcttgggcatctccaaca 47020767  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 20348205 - 20348147
Alignment:
Q  95 aatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||||||||||| ||| || ||||||||||| |||| |||||||||||||||||||    
T  20348205 aatatttattaagtctaaaattagttacataattaattgaatcttgggcatctccaaca 20348147  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5913137 - 5913211
Alignment:
Q  1 tctttagttcttcttaagtacttaagaatagtcttaaccactttccaatgtttctcatctgggtttgcttgatat 75  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  5913137 tctttagttcttcttaagtacttaagaatggtcttaaccactttccaatgttcctcacctgggtttgcttgatat 5913211  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 38485097 - 38485031
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  38485097 agataatgaatatttgttaagtctaaaatttgttacataattgattggatcttgggcatctccaaca 38485031  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 35418702 - 35418769
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaacat 154  Q
    ||||||| |||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||    
T  35418702 agataatgaatatttattaattctaaaattggttacataattgattggatcttgggcatctccaacat 35418769  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 36101620 - 36101690
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaacattat 157  Q
    ||||||| |||||||||||| |  ||| || ||||||||||||||||||||||||||||||||||||||||    
T  36101620 agataatgaatatttattaattttaaaattggttacataattgattggatcttgggcatctccaacattat 36101690  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 5919471 - 5919538
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaacat 154  Q
    ||||||| ||||| |||||| || ||| || |||||||||||||||||||||||||||||||||||||    
T  5919471 agataatgaatatctattaattctaaaattggttacataattgattggatcttgggcatctccaacat 5919538  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 5912536 - 5912602
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||| |||||| || ||| || ||||||||||||||||||||||||||||||||||||    
T  5912536 agataatgaatatctattaattctaaaattggttacataattgattggatcttgggcatctccaaca 5912602  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 6749943 - 6749877
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||| |||||| || ||| || ||||||||||||||||||||||||||||||||||||    
T  6749943 agataatgaatatctattaattctaaaattggttacataattgattggatcttgggcatctccaaca 6749877  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 41195486 - 41195552
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||||||||||||| ||| ||  ||||||||||||||||||||| |||||||||||||    
T  41195486 agataatgaatatttattaagtctaaaattgattacataattgattggatctttggcatctccaaca 41195552  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39224906 - 39224832
Alignment:
Q  1 tctttagttcttcttaagtacttaagaatagtcttaaccactttccaatgtttctcatctgggtttgcttgatat 75  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  39224906 tctttagttcttcttaagtacttaagaatggtcttaaccactttccaatgttcctcacctgggtttgcttgatat 39224832  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 40055561 - 40055495
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  40055561 agataatgaatatttgttaagtctaaaatttgttacataattgattggatcttgggcatctccaaca 40055495  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 39218960 - 39218894
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||    
T  39218960 agataatgaatatttattaattctaaaattggttacataattgattggatcttgggcatctccaaca 39218894  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 234898 - 234832
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| || ||| || | ||||||||||||||||||||||||||||||||||    
T  234898 agataatgaatatttattaattctaaaattggctacataattgattggatcttgggcatctccaaca 234832  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 39225486 - 39225420
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||| |||||| || ||| || ||||||||||||||||||||||||||||||||||||    
T  39225486 agataatgaatatctattaattctaaaattggttacataattgattggatcttgggcatctccaaca 39225420  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 40056398 - 40056464
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||||||||    
T  40056398 agataatgaatatttgttaagtctaaaatttattacatatttgattggatcttgggcatctccaaca 40056464  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 47114628 - 47114694
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||  |  ||| || ||||||||||||||||||||||||||||||||||||    
T  47114628 agataatgaatatttattagttttaaaattggttacataattgattggatcttgggcatctccaaca 47114694  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40055426 - 40055353
Alignment:
Q  1 tctttagttcttcttaagtacttaagaatagtcttaaccactttccaatgtttctcatctgggtttgcttgatat 75  Q
    ||||||| || ||||||||||||||| |  | |||||||| ||| ||||||||||||||||||||| ||||||||    
T  40055426 tctttagatcatcttaagtacttaaggacgg-cttaaccatttttcaatgtttctcatctgggtttacttgatat 40055353  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 16861719 - 16861785
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  16861719 agataatgaatatttgttaagtctaaaatttgttacataattgattggatcttgggcatctccaaca 16861785  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 49542703 - 49542637
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||    
T  49542703 agataatgaatatttatttagtctaaaattggttacataattgattggatcttgggcatctccaaca 49542637  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 19420069 - 19420003
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| |  ||| || ||||||||||||||||||||||||||||||||||||    
T  19420069 agataatgaatatttattaattttaaaattggttacataattgattggatcttgggcatctccaaca 19420003  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 40769083 - 40769017
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| |  ||| || |||||||||||||||||||||||| |||||||||||    
T  40769083 agataatgaatatttattaaatttaaaattggttacataattgattggatcttggacatctccaaca 40769017  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 46432848 - 46432914
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| || ||| || ||||||||||||||||||||||  ||||||||||||    
T  46432848 agataatgaatatttattaattctaaaattggttacataattgattggatcttctgcatctccaaca 46432914  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 8545473 - 8545406
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaacat 154  Q
    ||||||| |||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||    
T  8545473 agataatgaatatttattaattctaaaattggttacataattgattggatcttgggcatctccaacat 8545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 10566246 - 10566179
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaacat 154  Q
    ||||||| |||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||    
T  10566246 agataatgaatatttattaattctaaaattggttacataattgattggatcttgggcatctccaacat 10566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 10569496 - 10569430
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| |||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||    
T  10569496 agataatgaatatttattaattctaaaattggttacataattgattggatcttgggcatctccaaca 10569430  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 29674113 - 29674179
Alignment:
Q  87 agataataaatatttattaagtccaaagtttgttacataattgattggatcttgggcatctccaaca 153  Q
    ||||||| ||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  29674113 agataatgaatatttgttaagtctaaaatttattacataattgattggatcttgggcatctccaaca 29674179  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10569361 - 10569287
Alignment:
Q  1 tctttagttcttcttaagtacttaagaatagtcttaaccactttccaatgtttctcatctgggtttgcttgatat 75  Q
    ||||||| || ||||||||||||||| |  |||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  10569361 tctttagatcatcttaagtacttaaggacggtcttaaccatttttcaatgtttctcatcttggtttacttgatat 10569287  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 20282743 - 20282709
Alignment:
Q  118 gttacataattgattggatcttgggcatctccaac 152  Q
    |||||||||||||||||||||||||||||||||||    
T  20282743 gttacataattgattggatcttgggcatctccaac 20282709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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