View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10156_low_9 (Length: 356)

Name: NF10156_low_9
Description: NF10156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10156_low_9
NF10156_low_9
[»] chr7 (3 HSPs)
chr7 (1-338)||(4047038-4047375)
chr7 (1-338)||(3752863-3753200)
chr7 (234-337)||(9664336-9664439)
[»] chr4 (1 HSPs)
chr4 (234-337)||(13535360-13535463)
[»] chr6 (10 HSPs)
chr6 (212-337)||(6472076-6472201)
chr6 (212-337)||(6506503-6506628)
chr6 (213-337)||(6466351-6466475)
chr6 (213-338)||(6519605-6519730)
chr6 (261-337)||(6529265-6529341)
chr6 (235-325)||(6458416-6458506)
chr6 (216-329)||(6497694-6497807)
chr6 (252-337)||(6460857-6460942)
chr6 (252-337)||(7204144-7204230)
chr6 (252-337)||(7238895-7238981)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 4047038 - 4047375
Alignment:
Q  1 ttggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaaagaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047038 ttggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaaagaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactata 4047137  T
Q  101 agatgaaataacatggttttttggtatatttgtgtgagttttttgtgaggaagatattgtaagatctggtgaaaaaacttggtacaacattgctgttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047138 agatgaaataacatggttttttggtatatttgtgtgagttttttgtgaggaagatattgtaagatctggtgaaaaaacttggtacaacattgctgttgaa 4047237  T
Q  201 aagaggagaagagggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  4047238 aagaggagaagagggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaat 4047337  T
Q  301 tttgaaagaaagaatttgtagggaggggtgtggatagt 338  Q
    |||| ||||| || ||||||||||| ||||||||||||    
T  4047338 tttggaagaatgagtttgtagggagaggtgtggatagt 4047375  T

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Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 3753200 - 3752863
Alignment:
Q  1 ttggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaaagaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactata 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  3753200 ttggttttgtaactgaagcagttataaaagggcttcctctaactaaaaagaatcttagatttgaagagggaatgtcaagagtcacaccaagatcactata 3753101  T
Q  101 agatgaaataacatggttttttggtatatttgtgtgagttttttgtgaggaagatattgtaagatctggtgaaaaaacttggtacaacattgctgttgaa 200  Q
     ||||| |||||||||||||||| | | |||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||| || ||||    
T  3753100 tgatgagataacatggttttttgttgtgtttgtgtgagatttttgtgaggatgaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaa 3753001  T
Q  201 aagaggagaagagggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagt 300  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||||||  ||||||||||||||||||||| ||   |||||||| |||||||||||||    
T  3753000 aagaggagaagagggtaggaaatagagagggaaaagtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagt 3752901  T
Q  301 tttgaaagaaagaatttgtagggaggggtgtggatagt 338  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  3752900 tttggaagaaagagtttgtagggaggggtgtggatagt 3752863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 9664439 - 9664336
Alignment:
Q  234 gagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtgg 333  Q
    ||||| || |||||||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |    
T  9664439 gagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtag 9664340  T
Q  334 atag 337  Q
    ||||    
T  9664339 atag 9664336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 13535463 - 13535360
Alignment:
Q  234 gagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtgg 333  Q
    ||||| || |||||||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |    
T  13535463 gagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtag 13535364  T
Q  334 atag 337  Q
    ||||    
T  13535363 atag 13535360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 337
Target Start/End: Complemental strand, 6472201 - 6472076
Alignment:
Q  212 agggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaa 311  Q
    |||||| |||||||| || || |||||||| |||||||  |||||||| |||||||||||| |||| ||||||||||  || |||| |||||| ||||||    
T  6472201 agggtaagaaacagaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaa 6472102  T
Q  312 gaatttgtagggaggggtgtggatag 337  Q
    || |||||||||||||||||||||||    
T  6472101 gagtttgtagggaggggtgtggatag 6472076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 337
Target Start/End: Original strand, 6506503 - 6506628
Alignment:
Q  212 agggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaa 311  Q
    ||||||||| ||||| || || |||||||| |||||||  |||||||| |||| ||||||| ||  ||||||||| | ||||||||||||||| ||||||    
T  6506503 agggtatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaa 6506602  T
Q  312 gaatttgtagggaggggtgtggatag 337  Q
    || |||||||| ||||||||||||||    
T  6506603 gagtttgtaggcaggggtgtggatag 6506628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 337
Target Start/End: Original strand, 6466351 - 6466475
Alignment:
Q  213 gggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaag 312  Q
    ||||| |||| ||| || || |||||||| |||||||  || || || |||||||||||| |||| |||||||||| ||||||||||||||| |||||||    
T  6466351 gggtaagaaagagaaagtgatgagtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaag 6466450  T
Q  313 aatttgtagggaggggtgtggatag 337  Q
    | ||||| |||||||||||||||||    
T  6466451 agtttgtggggaggggtgtggatag 6466475  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 6519730 - 6519605
Alignment:
Q  213 gggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaag 312  Q
    ||||| |||||||| || || |||||||| ||||| |  ||||| || ||||| |||||| |||| ||||| |||| ||||||||||||||| |||||||    
T  6519730 gggtaagaaacagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaag 6519631  T
Q  313 aatttgtagggaggggtgtggatagt 338  Q
    | ||||||||||||||| ||||||||    
T  6519630 agtttgtagggaggggtttggatagt 6519605  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 6529265 - 6529341
Alignment:
Q  261 tgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtggatag 337  Q
    |||||||||||| |||| |||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  6529265 tgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatag 6529341  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 6458416 - 6458506
Alignment:
Q  235 agtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggag 325  Q
    |||||||||||||||  ||||||||||||||||| ||| ||   ||||||||||| |||||||| ||||| |||||||| ||||| |||||    
T  6458416 agtttgaggatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 6497694 - 6497807
Alignment:
Q  216 tatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaat 315  Q
    ||||||||||| || || |||| ||| |||||||  |||||||| ||||  |||||| |||| ||||| || | ||||||||||||||| |||||||| |    
T  6497694 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 6497793  T
Q  316 ttgtagggaggggt 329  Q
    |||| |||||||||    
T  6497794 ttgtggggaggggt 6497807  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 6460942 - 6460857
Alignment:
Q  252 aggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtggatag 337  Q
    |||||||| |||| ||||||  |||| |||||||| | ||||||||||||||| ||||| || ||||||||||| ||| |||||||    
T  6460942 aggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtttgtagggagtggtttggatag 6460857  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 7204230 - 7204144
Alignment:
Q  252 aggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtaggga-ggggtgtggatag 337  Q
    ||||| || |||||||||||| |||| ||||||||   ||||||||||||||| ||||||||| | || |||| |||||||||||||    
T  7204230 aggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 7238981 - 7238895
Alignment:
Q  252 aggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtaggga-ggggtgtggatag 337  Q
    ||||| || |||||||||||| |||| ||||||||   ||||||||||||||| ||||||||| | || |||| |||||||||||||    
T  7238981 aggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7238895  T

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