View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10157_high_2 (Length: 379)
Name: NF10157_high_2
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 224 - 361
Target Start/End: Complemental strand, 39419904 - 39419767
Alignment:
| Q |
224 |
atacccatgccttcccactccatcgccaccaccctcacttcgccactcacaactacagagatgctctcaccaaatccattctcttctttgaaggccaaag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39419904 |
atacccatgccttcccactccatcgccaccaccctcacttcgccactcacaactacagagatgctctcaccaaatccattctcttctttgaaggccaaag |
39419805 |
T |
|
| Q |
324 |
atcagggaagctcccttctaaccagagaatgtcttgga |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39419804 |
atcagggaagctcccttctaaccagagaatgtcttgga |
39419767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 39420113 - 39420007
Alignment:
| Q |
15 |
ggacatcacaaaggcagctttttcttttataaatagcagagttcgttccaagcattaaacagagcacactctgtcttgcattgcaggtaccactttgctc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39420113 |
ggacatcacaaaggcagctttttcttttatatatagcagagttcgttccaagcattaaacagagcacactctgtcttgcattgcaggtaccactttgctc |
39420014 |
T |
|
| Q |
115 |
tttggtt |
121 |
Q |
| |
|
||||||| |
|
|
| T |
39420013 |
tttggtt |
39420007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University