View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10157_high_3 (Length: 319)
Name: NF10157_high_3
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 31548403 - 31548677
Alignment:
| Q |
23 |
acaagctgtgaaacttctacaaaaacttcttcttgtgatacgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaatag |
122 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31548403 |
acaagctgtgaaacttctacaaacacttcttcttgtgatatgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaatag |
31548502 |
T |
|
| Q |
123 |
gagtcacatgagttgccaatttaataagatcataactaaaacaatcatagaaaaataagaaaaattatactttcaagtttcaaatacatcatcataacag |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
31548503 |
gagtcacacgagttgccaatttaataagatcataactaaaacaatcatagaaaaataagaaaaattatac-------tttcaaatacatcatcacaacag |
31548595 |
T |
|
| Q |
223 |
atataccattttgggctaggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgccttctgtgct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31548596 |
atataccattttgggctaggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgccttctgtgct |
31548677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University