View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10157_low_11 (Length: 241)
Name: NF10157_low_11
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11535662 - 11535888
Alignment:
| Q |
1 |
tttaaatctatcgaaattacaaacaaatttttaaggatcatgttaacaagtgtccaaaatgtacatgataaggtcaacaacatcgtaaccagaattctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11535662 |
tttaaatctatcgaaattacaaacaaatttttaaaggtcatgttaacaagtgtccaaaatgtatatgataaggtcaacaacatcgtaacaagaattctag |
11535761 |
T |
|
| Q |
101 |
ctcaatatacaaaaatatccaaatcatttggtcaaacaccgaaaccgcaactctcttacataataattgttccacatccat----gaaatcttgcatttt |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11535762 |
ctcaatatacaaaaatatccaaatcgtttgatcaaacaccgaaaccgcaactctcttacttaataattgttccacatccatgaaagaaatcttgcatttt |
11535861 |
T |
|
| Q |
197 |
aaattgtgttattttttatggttatgc |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
11535862 |
aaattgtgttattttttatggttatgc |
11535888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11524559 - 11524716
Alignment:
| Q |
1 |
tttaaatctatcgaaattacaaacaaatttttaaggatcatgttaacaagtgtccaaaatgtacatgataaggtcaacaacatcgtaaccagaattctag |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
11524559 |
tttaaatctatcgaa-ttacaaacaaatttttaaaggttatgttaacaagtgtccaaaatatacatgataaggttaaaaacatcgtaaccagaattctaa |
11524657 |
T |
|
| Q |
101 |
ctcaatatacaaaaatatccaaatcatttggtcaaacaccgaaaccgcaactctcttac |
159 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11524658 |
ctcaatatataaaaatatccaaatcgtttggtcaaacaccgaaaccgcaactctcttac |
11524716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University