View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10157_low_12 (Length: 237)
Name: NF10157_low_12
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 53006223 - 53006428
Alignment:
| Q |
16 |
catttacaaggcacacaatgcattcaaataaactttgcttatttctcctggaaaggaaatttttcgacatcttactgtagtcatttcataactgatctct |
115 |
Q |
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| T |
53006223 |
catttacaaggcacacaatgcattcaaataaactttgcctatttctcctggaaaggaaatttttcgacatcttattgtagtcatttcataactgatctct |
53006322 |
T |
|
| Q |
116 |
agttagttattattcaaatcataattctatgtttccctatgtagcggcaactatccaaaatgattcagatattcgtttcgaacacctattcgaaaactaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
53006323 |
agttagttattattcaaatcataattctatgtttccctatgtagcggcgactatccaaaatgattcagatattcgttttgaacacctatttgaaaactaa |
53006422 |
T |
|
| Q |
216 |
tctgtg |
221 |
Q |
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|||||| |
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| T |
53006423 |
tctgtg |
53006428 |
T |
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