View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10157_low_13 (Length: 225)
Name: NF10157_low_13
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 37811761 - 37811869
Alignment:
| Q |
84 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37811761 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgcttcgatttag |
37811860 |
T |
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| Q |
184 |
acctacctt |
192 |
Q |
| |
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||||||||| |
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| T |
37811861 |
acctacctt |
37811869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 37811671 - 37811738
Alignment:
| Q |
18 |
gctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811671 |
gctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc |
37811738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 52357166 - 52357275
Alignment:
| Q |
84 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag |
183 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||| ||| ||||||||||||| |||||||||| |
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| T |
52357166 |
tccaattcccgatcctcgctatgttctctgtctttcctcttatgcgaggagtatcg---ctccaatgaatcttccctctcttcatcgcgcttcgatttag |
52357262 |
T |
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| Q |
184 |
acctacctttgct |
196 |
Q |
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||||||||||||| |
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| T |
52357263 |
acctacctttgct |
52357275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 52356249 - 52356283
Alignment:
| Q |
18 |
gctaaggcatcactactagagaggcttccaagttt |
52 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
52356249 |
gctaaggcatcactactagagaggcttccaagttt |
52356283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 17209436 - 17209546
Alignment:
| Q |
84 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag |
183 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||| | | || |||||||| |||||||||||| | | | |||||| || |
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| T |
17209436 |
tccaattcccggtcctcgctatgttctctatctttcctcttatgcgaggagtattgcggtttcactgaatcctccatctcttcgtagtgcttcgatatat |
17209535 |
T |
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| Q |
184 |
acctacctttg |
194 |
Q |
| |
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||||||||||| |
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|
| T |
17209536 |
acctacctttg |
17209546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 17209145 - 17209179
Alignment:
| Q |
18 |
gctaaggcatcactactagagaggcttccaagttt |
52 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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|
| T |
17209145 |
gctaaggcatcactactagagaagcttccaagttt |
17209179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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