View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10157_low_2 (Length: 457)
Name: NF10157_low_2
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_low_2 |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 27024502 - 27024807
Alignment:
| Q |
18 |
ataactatactattgccattccagaagaagaggttgatattggtatcaattcatgcaagttcaacctacacgcaagagtgatatg-cccaaaggtacaac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
27024502 |
ataactatactattgccattccagaagaagaggttgatactggtatcaattcatgcaagttcaacctacacacaagagtgatatggcccaaaggtacaac |
27024601 |
T |
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| Q |
117 |
tcatctcactgatattgctctgcgtaaaggttttttatgaattctctttttcatctttggaagatgtcaaaagagttaaatccacttcattgtcgaatct |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27024602 |
tcatctcactgatattgctctgcgtaaagcttttttatgaattctctttttcatctttggaagatgtcaaaagagttaaatccacttcatcgtcgaatct |
27024701 |
T |
|
| Q |
217 |
aaaccctggggtgttgaaactttttgcttggacaaggaactttaaccctaaaattcaaaatactacatcaactcaggtgtgacttagaatctatgggtta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27024702 |
aaaccctggggtgttgaaactttttgcttggacaaggaactttaaccctaaaattcaaaatactacatcaactcaggtgtgacttagaatctatgagttt |
27024801 |
T |
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| Q |
317 |
tctcaa |
322 |
Q |
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|||||| |
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| T |
27024802 |
tctcaa |
27024807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 6307437 - 6307498
Alignment:
| Q |
396 |
acttattttatgtgtatagaatttaagaaaattatatcatccttcttttaattaaattatat |
457 |
Q |
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| T |
6307437 |
acttattttaggtgtaaataatttaagaaaattatggcatccttcttttaattaaattatat |
6307498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 354
Target Start/End: Original strand, 24766900 - 24767100
Alignment:
| Q |
154 |
tgaattctctttttcatctttggaagatgtcaaaagagttaaatccacttcattgtcgaatctaaaccctggggtgttgaaactttttgcttggacaagg |
253 |
Q |
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||||||||||||| |||||||||||||||| |||||||| | |||||| || | | ||| ||||| ||||| || ||||| |||||| | ||||||||| |
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| T |
24766900 |
tgaattctcttttccatctttggaagatgttaaaagagtcatatccacctcttcatggaaactaaatcctggagttttgaagcttttttcctggacaagg |
24766999 |
T |
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| Q |
254 |
aactttaaccctaaaattcaaaatactacatcaactcaggtgtgacttagaatctatgggttatctcaagaatattggcgccctaaaattttgttttcta |
353 |
Q |
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| T |
24767000 |
gattttaaccctaaagttcaaaatacaacctcaactcaggtttggcttagaatttatggtcttcctcaagaatactggcgccctagaatcttgttttcta |
24767099 |
T |
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| Q |
354 |
t |
354 |
Q |
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| T |
24767100 |
t |
24767100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 361
Target Start/End: Complemental strand, 4343 - 4143
Alignment:
| Q |
161 |
tctttttcatctttggaagatgtcaaaagagttaaatccacttcattgtcgaatctaaaccctggggtgttgaaactttttgcttggacaaggaacttta |
260 |
Q |
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|||||||||||||| |||||||| || ||||| | |||||| || | || |||||| |||||||| || | ||||| ||||| |||||| | | |||| |
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| T |
4343 |
tctttttcatctttagaagatgttaagagagtcagatccacctcctcgtggaatctcaaccctggagttctaaaactgtttgcctggacacgagatttta |
4244 |
T |
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| Q |
261 |
accctaaaattcaaaatactacatcaactcaggtgtgacttagaatctatgggttatctcaagaatattggcgccctaaaattttgttttctatagctaa |
360 |
Q |
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|||| ||||||||||| |||||||| | ||||| || |||||||| ||||| | | ||||||||||||||||||| ||| |||||| | |||||||| |
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| T |
4243 |
accccaaaattcaaaactctacatcagcacaggtatggcttagaatttatggacttccacaagaatattggcgccctagaatcttgtttgcaatagctaa |
4144 |
T |
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| Q |
361 |
t |
361 |
Q |
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|
| T |
4143 |
t |
4143 |
T |
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