View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10157_low_3 (Length: 450)
Name: NF10157_low_3
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 240 - 442
Target Start/End: Complemental strand, 26211394 - 26211192
Alignment:
| Q |
240 |
tggagatattgtcacaaatgtggtcattgttagggttactaacagttctccaaaacgtacttccaacacagcttctctcagtgcttcattcactgtacga |
339 |
Q |
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| T |
26211394 |
tggagatattgtcacaaatgtggtcattgttagggttactaacagttctccaaaacgtacttccaacacagcttctctcagtgcttcattcactgtacga |
26211295 |
T |
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| Q |
340 |
atcacttcaagatcttctttctccatactcatactttgaaattcccgaattcaatggttactgcggcgtcgaactcaacgacctctaccgccacgttcat |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26211294 |
atcacttcaagatcttctttctccatactcatactttgaaattcccgaattcaacggttactgcggcgtcgaactcaacgacctctaccgccacgtccat |
26211195 |
T |
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| Q |
440 |
ctc |
442 |
Q |
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||| |
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| T |
26211194 |
ctc |
26211192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 26211614 - 26211437
Alignment:
| Q |
16 |
atcatctttacctttaactttaacctcctctacaacatcatgtttatttaatgcttctttttcttcctcaaaacacaaaacattaacctttaccaaacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26211614 |
atcatctttacctttaactttaacctcctctacaacatcatgtttatttaatgcttctttttcttcctcaaaacacaaaacattaacctttaccaaacca |
26211515 |
T |
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| Q |
116 |
tgttcattcttttatgcaacgnnnnnnnnnnnnnnacaacctcaaaaagaaacattctcattcacgttcctattcaattatt |
197 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26211514 |
tgttcattcttttatgcaacg----tatatatataacaacctcaaaaagaaacattctcattcacgttcctattcaattatt |
26211437 |
T |
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