View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10157_low_5 (Length: 378)
Name: NF10157_low_5
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10157_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 90 - 360
Target Start/End: Original strand, 22353682 - 22353951
Alignment:
| Q |
90 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcaactgaatcacttgacgagtaactaggtaaaaatctaataccattgattcatgtttat |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22353682 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcagctgaatcccttgacgagtaactaggtaaaaatctaataccattgtttcatgtttat |
22353781 |
T |
|
| Q |
190 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgctgttgatgaagtttacgttttttagttgcatactgctgtta |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
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| T |
22353782 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgttgttgatgaagtttacgttttttagttgcatactactacta |
22353881 |
T |
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| Q |
290 |
tgtgnnnnnnnnnatgtgccttcaattagagtctgacttacatattaatgaaggttgtttgtcaatgtcat |
360 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
22353882 |
tgtg-tttttcttatgtgccttcaattagagcctgacttacatattaatgaaggttgtttgtcactgtcat |
22353951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 90 - 360
Target Start/End: Complemental strand, 26072061 - 26071792
Alignment:
| Q |
90 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcaactgaatcacttgacgagtaactaggtaaaaatctaataccattgattcatgtttat |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26072061 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcagctgaatcccttgacgagtaactaggtaaaaatctaataccattgtttcatgtttat |
26071962 |
T |
|
| Q |
190 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgctgttgatgaagtttacgttttttagttgcatactgctgtta |
289 |
Q |
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| T |
26071961 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgttgttgatgaagtttacgttttttagttgcatactactacta |
26071862 |
T |
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| Q |
290 |
tgtgnnnnnnnnnatgtgccttcaattagagtctgacttacatattaatgaaggttgtttgtcaatgtcat |
360 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
26071861 |
tgtg-tttttcttatgtgccttcaattagagcctgacttacatattaatgaaggttgtttgtcactgtcat |
26071792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 90 - 360
Target Start/End: Original strand, 1671641 - 1671910
Alignment:
| Q |
90 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcaactgaatcacttgacgagtaactaggtaaaaatctaataccattgattcatgtttat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1671641 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcagctgaatcccttgacgagtaactaggtaaaaatctaataccattgtttcatgtttat |
1671740 |
T |
|
| Q |
190 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgctgttgatgaagtttacgttttttagttgcatactgctgtta |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
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| T |
1671741 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgttgttgatgaagtttacgttttttagttgcatactactacta |
1671840 |
T |
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| Q |
290 |
tgtgnnnnnnnnnatgtgccttcaattagagtctgacttacatattaatgaaggttgtttgtcaatgtcat |
360 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
1671841 |
tgtg-tttttcttatgtgccttcaattagagcctgacttacatattaatgaaggttgtttgtcactgtcat |
1671910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 90 - 360
Target Start/End: Complemental strand, 44270849 - 44270580
Alignment:
| Q |
90 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcaactgaatcacttgacgagtaactaggtaaaaatctaataccattgattcatgtttat |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44270849 |
gtcattagaaatgtcatatttgaatggtctcgaggagtttgcagctgaatcccttgacgagtaactaggtaaaaatctaataccattgtttcatgtttat |
44270750 |
T |
|
| Q |
190 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgctgttgatgaagtttacgttttttagttgcatactgctgtta |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
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| T |
44270749 |
actaattttgtcttgtgtgattggtgttcctgttgttgatggggtagtctatttcctgttgttgatgaagtttacgttttttagttgcatactactacta |
44270650 |
T |
|
| Q |
290 |
tgtgnnnnnnnnnatgtgccttcaattagagtctgacttacatattaatgaaggttgtttgtcaatgtcat |
360 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
44270649 |
tgtg-tttttcttatgtgccttcaattagagcctgacttacatattaatgaaggttgtttgtcactgtcat |
44270580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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