View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10157_low_7 (Length: 273)

Name: NF10157_low_7
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10157_low_7
NF10157_low_7
[»] chr5 (1 HSPs)
chr5 (11-257)||(2688305-2688551)
[»] chr7 (3 HSPs)
chr7 (19-256)||(22196943-22197181)
chr7 (19-256)||(22240640-22240878)
chr7 (47-256)||(39844907-39845117)
[»] chr3 (5 HSPs)
chr3 (20-241)||(42773777-42773999)
chr3 (82-138)||(44656976-44657032)
chr3 (85-240)||(52612844-52613000)
chr3 (92-140)||(55167506-55167554)
chr3 (37-142)||(1547621-1547726)
[»] chr6 (4 HSPs)
chr6 (19-250)||(20794288-20794519)
chr6 (23-256)||(14459316-14459550)
chr6 (92-139)||(33113403-33113450)
chr6 (79-135)||(2030995-2031051)
[»] chr1 (2 HSPs)
chr1 (92-140)||(38548074-38548122)
chr1 (98-140)||(12172359-12172401)
[»] chr8 (3 HSPs)
chr8 (79-140)||(10124218-10124279)
chr8 (110-190)||(27220312-27220393)
chr8 (79-135)||(5201285-5201341)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 2688551 - 2688305
Alignment:
Q  11 cagagaccacctctcatctttttctccattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2688551 cagagaccacctctcatctttttctccattgtgatttggctcggaatgtttggttgacttcgatgtcttggttggatttgcattttataatgcccccaaa 2688452  T
Q  111 cttattcatccattgggagtgttggagtggggaccactaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttgga 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688451 cttattcatccattgggagtgttggagtggggaccactaaataagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttgga 2688352  T
Q  211 atgctagaaatgattgcatttttaataatgttaatgctaggtgggag 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2688351 atgctagaaatgattgcatttttaataatgttaatgctaggtgggag 2688305  T

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Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 22196943 - 22197181
Alignment:
Q  19 acctctcatctttttctccattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattca 118  Q
    ||||| |||||||| || |||||||||||||| ||||| |||||||||| |||||||||||| ||||||||| ||||||||||||| || ||| | || |    
T  22196943 acctcacatcttttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaaccttttta 22197042  T
Q  119 tccattgggagtgttggagt-ggggaccactaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctag 217  Q
    |||||||| ||||||||||| |||| ||  | | | ||||| | ||||| || || || |||||||||||||||| | |||||||  ||||||| |||||    
T  22197043 tccattggaagtgttggagtgggggtccttttattaagaaagttcggaacgggttacgaatgatttgggaggccgggatttgggtgatttggaaggctag 22197142  T
Q  218 aaatgattgcatttttaataatgttaatgctaggtggga 256  Q
    ||||||  | |||||||||||||||| |||||| |||||    
T  22197143 aaatgaccgaatttttaataatgttattgctagatggga 22197181  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 22240878 - 22240640
Alignment:
Q  19 acctctcatctttttctccattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattca 118  Q
    ||||| |||||||| || |||||||||||||| ||||| |||||||||| |||||||||||| ||||||||| ||||||||||||| || ||| | || |    
T  22240878 acctcacatcttttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaaccttttta 22240779  T
Q  119 tccattgggagtgttggagt-ggggaccactaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctag 217  Q
    |||||||| ||||||||||| |||| ||  | | | ||||| | ||||| || || || |||||||||||||||| | |||||||  ||||||| |||||    
T  22240778 tccattggaagtgttggagtgggggtccttttattaagaaagttcggaacgggttacgaatgatttgggaggccgggatttgggtgatttggaaggctag 22240679  T
Q  218 aaatgattgcatttttaataatgttaatgctaggtggga 256  Q
    ||||||  | |||||||||||||||| |||||| |||||    
T  22240678 aaatgaccgaatttttaataatgttattgctagatggga 22240640  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 39844907 - 39845117
Alignment:
Q  47 tggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattcatccattgggagtgttggagtgggg-acc 145  Q
    ||||| |||| |||||||||| | ||||||  ||||| |||||| ||||| ||||||| || || ||| | || |||||||| ||||||||||||| | |    
T  39844907 tggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatttaattattcattgggaatgttggagtgggggatc 39845006  T
Q  146 actaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctagaaatgattgcatttttaataatgttaat 245  Q
      | ||| ||||||| ||||| || ||||| ||||| |||||||  ||  |||||||  ||||||| || ||||||||  | |||||||||||||  |||    
T  39845007 tattaataagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggaaggcgagaaatgaccggatttttaataatgaaaat 39845106  T
Q  246 gctaggtggga 256  Q
    || ||||||||    
T  39845107 gcgaggtggga 39845117  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 42773999 - 42773777
Alignment:
Q  20 cctctcatctttttctccattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattcat 119  Q
    |||| ||||| ||||| ||||| ||||||||  ||||  ||||||||| |||||||||||||||||| ||||||||| | ||||| |||||| | || ||    
T  42773999 cctcccatctctttcttcattgcgatttggcgtggaatatttggttgagtttgatgtcttggttggacttgcattttgttatgcctccaaacctctttat 42773900  T
Q  120 ccattgggagtgttggagtgggg-accactaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctaga 218  Q
     |||||||||||||||||||||| | | || ||  ||||| |||| ||||| ||||| |||||||||||||||||| |||||||  ||||||| ||||||    
T  42773899 tcattgggagtgttggagtgggggatctcttaagaagaaagtccgtaatggtttgcgtatgatttgggaggccgtgatttgggtaatttggaaggctaga 42773800  T
Q  219 aatgattgcatttttaataatgt 241  Q
    ||||| |||||||| || |||||    
T  42773799 aatgagtgcattttcaacaatgt 42773777  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 44657032 - 44656976
Alignment:
Q  82 ttggatttgcattttataatgcccccaaacttattcatccattgggagtgttggagt 138  Q
    ||||||||| ||||||||||||||||||| ||||| || ||||||||||| ||||||    
T  44657032 ttggatttgaattttataatgcccccaaatttatttattcattgggagtgctggagt 44656976  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 52613000 - 52612844
Alignment:
Q  85 gatttgcattttataatgcccccaaacttattcatccattgggagtgttggagt-ggggaccactaaatgagaaaatccggaatggcttgcggatgattt 183  Q
    |||||| ||||||||||||| ||||| || || || |||||||||||||||||| |||||    || || |||| || ||||| || ||| |||||||||    
T  52613000 gatttgaattttataatgccgccaaatttgttaattcattgggagtgttggagtgggggattgatacataagaagattcggaagggattgaggatgattt 52612901  T
Q  184 gggaggccgtggtttgggtcttttggaatgctagaaatgattgcatttttaataatg 240  Q
    ||||||  ||| ||||||| || ||||| || || |||||| | ||||| |||||||    
T  52612900 gggaggtggtgatttgggttttgtggaaagcgaggaatgatcgtattttcaataatg 52612844  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 55167554 - 55167506
Alignment:
Q  92 attttataatgcccccaaacttattcatccattgggagtgttggagtgg 140  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  55167554 attttataatgcctccaaatttatttatccattgggagtgttggagtgg 55167506  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 1547621 - 1547726
Alignment:
Q  37 cattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattcatccattgggagtgttgga 136  Q
    ||||||||  ||||| |||| |||||||||| | ||||||  ||||| |||||| ||||| ||||||| || || ||| | || |||||||| |||||||    
T  1547621 cattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatttaattattcattgggaatgttgga 1547720  T
Q  137 gtgggg 142  Q
    ||||||    
T  1547721 gtgggg 1547726  T

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Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 20794288 - 20794519
Alignment:
Q  19 acctctcatctttttctccattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattca 118  Q
    ||||| ||||| || || |||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||  | ||| | || |    
T  20794288 acctcacatctcttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttggttggatttgaattttataatgccttcgaaccttttta 20794387  T
Q  119 tccattgggagtgttggagt-ggggaccactaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctag 217  Q
    |||||||||||||||||||| |||| ||  |  || ||||| | ||||| |  ||||||||||||| ||||| || | |||||||  ||||||| |||||    
T  20794388 tccattgggagtgttggagtgggggtccttttcataagaaagttcggaacgagttgcggatgattt-ggaggtcgggatttgggtgatttggaaggctag 20794486  T
Q  218 aaatgattgcatttttaataatgttaatgctag 250  Q
    |||||| |||| ||||||||||| || ||||||    
T  20794487 aaatgagtgcaattttaataatgctattgctag 20794519  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 14459316 - 14459550
Alignment:
Q  23 ctcatctttttctccattgtgatttggctcggaacgtttggttgactttgatgtcttggttggatttgcattttataatgcccccaaacttattcatcca 122  Q
    ||||||||||||| ||||| || |||||   ||| || |||||   ||||||| ||||||| |||||| ||||| | ||||| || || || || |||||    
T  14459316 ctcatctttttcttcattgcgacttggcaaagaatgtgtggttacatttgatgacttggttagatttgaattttgttatgccgccgaatttgtttatcca 14459415  T
Q  123 ttgggagtgttggagt-ggggaccactaaatgagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttggaatgctagaaat 221  Q
    |||||| ||||||||  ||||| || |  || |||| || ||||| |||||||||||||| |||||||  | |||||||||  |||||   ||||| |||    
T  14459416 ttgggaatgttggagcaggggatcaattcataagaagattcggaagggcttgcggatgatatgggaggtagcggtttgggtaatttggcgcgctaggaat 14459515  T
Q  222 gattgcatttttaataatgttaatgctaggtggga 256  Q
    ||  |||||||||||||||  | ||||||||||||    
T  14459516 gagggcatttttaataatgggattgctaggtggga 14459550  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 33113450 - 33113403
Alignment:
Q  92 attttataatgcccccaaacttattcatccattgggagtgttggagtg 139  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  33113450 attttataatgcctccaaatttatttatccattgggagtgttggagtg 33113403  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 2031051 - 2030995
Alignment:
Q  79 tggttggatttgcattttataatgcccccaaacttattcatccattgggagtgttgg 135  Q
    |||||||||||| ||||| ||||||| || || ||||| ||||||||||||||||||    
T  2031051 tggttggatttgaattttgtaatgccacccaatttatttatccattgggagtgttgg 2030995  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 38548074 - 38548122
Alignment:
Q  92 attttataatgcccccaaacttattcatccattgggagtgttggagtgg 140  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  38548074 attttataatgcctccaaatttatttatccattgggagtgttggagtgg 38548122  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 12172359 - 12172401
Alignment:
Q  98 taatgcccccaaacttattcatccattgggagtgttggagtgg 140  Q
    ||||||| |||||||| || |||||||||||||||||||||||    
T  12172359 taatgcctccaaacttgtttatccattgggagtgttggagtgg 12172401  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 10124218 - 10124279
Alignment:
Q  79 tggttggatttgcattttataatgcccccaaacttattcatccattgggagtgttggagtgg 140  Q
    |||||| ||||| ||||||||||||| ||||||||  | || ||||||||||||||||||||    
T  10124218 tggttgaatttgaattttataatgcctccaaacttggttattcattgggagtgttggagtgg 10124279  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 27220312 - 27220393
Alignment:
Q  110 acttattcatccattgggagtgttggagtgg-ggaccactaaatgagaaaatccggaatggcttgcggatgatttgggaggc 190  Q
    ||||||| ||||||||||||||||||||||| || ||  | ||| ||||||||||||| || ||||| ||||| ||||||||    
T  27220312 acttatttatccattgggagtgttggagtggaggcccgatcaataagaaaatccggaagggtttgcgtatgatatgggaggc 27220393  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 5201341 - 5201285
Alignment:
Q  79 tggttggatttgcattttataatgcccccaaacttattcatccattgggagtgttgg 135  Q
    |||||||||||| ||||| ||||||| || ||||||||| |||||||||| ||||||    
T  5201341 tggttggatttgaattttgtaatgccacccaacttattcgtccattgggaatgttgg 5201285  T

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