View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10157_low_9 (Length: 250)

Name: NF10157_low_9
Description: NF10157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10157_low_9
NF10157_low_9
[»] chr3 (3 HSPs)
chr3 (59-250)||(32355871-32356063)
chr3 (14-58)||(32356115-32356159)
chr3 (202-250)||(23379339-23379387)
[»] chr2 (2 HSPs)
chr2 (59-250)||(6182099-6182290)
chr2 (14-58)||(6182342-6182386)
[»] scaffold1052 (2 HSPs)
scaffold1052 (59-250)||(337-528)
scaffold1052 (14-58)||(580-624)
[»] chr1 (2 HSPs)
chr1 (59-139)||(5100943-5101023)
chr1 (14-58)||(5101075-5101119)
[»] chr5 (6 HSPs)
chr5 (169-223)||(326241-326295)
chr5 (156-228)||(17591331-17591404)
chr5 (156-228)||(36912939-36913012)
chr5 (156-228)||(36912274-36912344)
chr5 (156-228)||(17590593-17590666)
chr5 (194-250)||(6353691-6353747)
[»] chr4 (2 HSPs)
chr4 (156-225)||(19129556-19129626)
chr4 (159-227)||(231999-232067)
[»] chr7 (3 HSPs)
chr7 (156-192)||(14735422-14735458)
chr7 (169-223)||(10200129-10200183)
chr7 (156-228)||(14736117-14736190)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 32356063 - 32355871
Alignment:
Q  59 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagtggnnnnnnn-tctagtctg 157  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||    
T  32356063 tgtagagtttgttggaacttggaaccatggtttctggaaaaaggcacacacatagacaagataacggtggtagaagaaagtggaaaaaaaatctagtgtg 32355964  T
Q  158 aagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttccgttacacaccctaaa 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  32355963 aagagactatcataagatcaatgttcatcttaaatctaatggtcaaaacctactttcctatggtggaaaaatctttcccttacccaccctaaa 32355871  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 32356159 - 32356115
Alignment:
Q  14 caaaggaatgagatgaaattgaaaaaccatatgtttatagttata 58  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  32356159 caaaggaatgagatgaaattgaaaaatcatatgtttatagttata 32356115  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 23379387 - 23379339
Alignment:
Q  202 aaaacctactttcctatggtgggaaaatctttccgttacacaccctaaa 250  Q
    |||| |||||||||||| |||||||||||||||| |||| |||||||||    
T  23379387 aaaagctactttcctatagtgggaaaatctttcccttacccaccctaaa 23379339  T

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Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 6182290 - 6182099
Alignment:
Q  59 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagtggnnnnnnntct-agtctg 157  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||       | | ||| ||    
T  6182290 tgtagagtttgttggaacttggaaccatggtttctggaaaaagacacacacatagacaagataacggtggtagaagaaagtggaaaaaaattttagt-tg 6182192  T
Q  158 aagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttccgttacacaccctaaa 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||    
T  6182191 aagagactatcataagatcaatgttcatcttaaatctaatggtcaaaatctactttcctatggtggaaaaatctttcccttacccaccctaaa 6182099  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 6182386 - 6182342
Alignment:
Q  14 caaaggaatgagatgaaattgaaaaaccatatgtttatagttata 58  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  6182386 caaaggaatgagatgaaattgaaaaatcatatgtttatagttata 6182342  T

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Target: scaffold1052 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 528 - 337
Alignment:
Q  59 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagtggnnnnnnntctagtctga 158  Q
    ||||||||||||||||| |||||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||||       |||  | |||    
T  528 tgtagagtttgttggaatttggaaccatggattttggaaaaaggcacacacatagacaatataacggtggtagaagaaagtggaaaaaaatcttatgtga 429  T
Q  159 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttccgttacacaccctaaa 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  428 agagactatcataagatcaatgttcatcttaaatctaatggtcaaaacctactttcctatggtgggaaaatcttttccttacccaccctaaa 337  T

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Target: scaffold1052; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 624 - 580
Alignment:
Q  14 caaaggaatgagatgaaattgaaaaaccatatgtttatagttata 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  624 caaaggaatgagatgaaattgaaaaaccatatgtttatagttata 580  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 5101023 - 5100943
Alignment:
Q  59 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101023 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagt 5100943  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 5101119 - 5101075
Alignment:
Q  14 caaaggaatgagatgaaattgaaaaaccatatgtttatagttata 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5101119 caaaggaatgagatgaaattgaaaaaccatatgtttatagttata 5101075  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 326241 - 326295
Alignment:
Q  169 ataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgg 223  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| | |||||||    
T  326241 ataagatcaatgttcatcttaaatttaatggtcaaaacttacttttccatggtgg 326295  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 17591331 - 17591404
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 228  Q
    |||||||||||| ||||||||||||||| ||||||||  ||||| |||||| | ||||||| ||||||| ||||    
T  17591331 tgaagagactattataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtggaaaaa 17591404  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 36912939 - 36913012
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 228  Q
    |||||||||||||||||||||||||||| ||||||||  ||||| |||||| | ||||| | |||||| |||||    
T  36912939 tgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaacttttccatggtgagaaaa 36913012  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 36912344 - 36912274
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 228  Q
    ||||||||||||||||||||||||||   ||||||||  ||||| |||||| | ||||||| ||||||||||||    
T  36912344 tgaagagactatcataagatcaatgt---tcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaa 36912274  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 17590666 - 17590593
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 228  Q
    |||||||| ||||||||||||||||||| ||||||||  ||||| |||||| |  |||||| ||||| ||||||    
T  17590666 tgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaa 17590593  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 6353747 - 6353691
Alignment:
Q  194 taatggtcaaaacctactttcctatggtgggaaaatctttccgttacacaccctaaa 250  Q
    ||||||| ||||  |||||||||||| ||||||||||||||| | || |||||||||    
T  6353747 taatggttaaaatttactttcctatgatgggaaaatctttccctcacccaccctaaa 6353691  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 19129626 - 19129556
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtggga 225  Q
    |||||||||||||||||||||||||||| ||||||||  ||||| |||||| | ||||||| |||||||||    
T  19129626 tgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtggga 19129556  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 231999 - 232067
Alignment:
Q  159 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaa 227  Q
    ||||||||| ||||||||||||||| || |  || ||||||| ||||  |||||||| |||||||||||    
T  231999 agagactatgataagatcaatgttcctcatttatctaatggttaaaatttactttcccatggtgggaaa 232067  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 14735458 - 14735422
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaat 192  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14735458 tgaagagactatcataagatcaatgttcctcttaaat 14735422  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 10200183 - 10200129
Alignment:
Q  169 ataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgg 223  Q
    |||||||||||| || |||||||| ||||||||  ||| ||||||||||||||||    
T  10200183 ataagatcaatgctcctcttaaatctaatggtcgcaacttactttcctatggtgg 10200129  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 14736117 - 14736190
Alignment:
Q  156 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 228  Q
    |||||||| ||||||||||||||||||| ||||||||  ||||| |||||| |  |||||| ||||| ||||||    
T  14736117 tgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaa 14736190  T

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