View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10158_high_2 (Length: 249)
Name: NF10158_high_2
Description: NF10158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10158_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 27508177 - 27507938
Alignment:
| Q |
1 |
atgtatcctttcagctatatatattcatgactgctaaacatttcgaaccaacacaaatctc--acattcttagc---ttgaaattcagaaacttgagtat |
95 |
Q |
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| T |
27508177 |
atgtatcctttcagctatatatattcatgactgctaaacatttcgaaccaacacaaatctctcacattcttagcaatttgaaattcagaaacttgagtat |
27508078 |
T |
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| Q |
96 |
tgtttactagtattttctagagcagtaannnnnnnn-ctagacatacaagaatgggttttcatttacctggtatcagaagggcatcatcttctaaaggct |
194 |
Q |
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| T |
27508077 |
tgtttactagtattttctagagcaataatttttttttctagacatacaagaatgggttttcatttacctggtatcagaagggcatcatcttcaaaaggct |
27507978 |
T |
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| Q |
195 |
tggatatgccaaagggataccttgcggtgtacgtaggagt |
234 |
Q |
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| T |
27507977 |
tggatatgccaaagggataccttgcggtgtacgtaggagt |
27507938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 27503154 - 27502933
Alignment:
| Q |
16 |
tatatatattcatgactgctaaacatttcgaaccaacacaaatc--tcacattcttagc---ttgaaattcagaaacttgagtattgtttactagtattt |
110 |
Q |
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| T |
27503154 |
tatatatattcatgactgcaaaacatttcgaacaaacacgaatcactcacattgttagccatttgaaattcagaaacttgagtcttgt--actagtattt |
27503057 |
T |
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| Q |
111 |
tctagagcagtaannnnnnnn-ctagacatacaagaatgggttttcatttacctggtatcagaagggcatcatcttctaaaggcttggatatgccaaagg |
209 |
Q |
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| T |
27503056 |
tctagtgcagttatttttttttctagacatacaagaatgggttttcatttaccaggtatcaaaaggtcatcatcttcaaaaggcttggatgtgccaaaag |
27502957 |
T |
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| Q |
210 |
gataccttgcggtgtacgtaggag |
233 |
Q |
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| T |
27502956 |
gatatcttgccgtttatgtaggag |
27502933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 27501231 - 27501290
Alignment:
| Q |
136 |
acatacaagaatgggttttcatttacctggtatc---agaagggcatcatcttctaaagg |
192 |
Q |
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| T |
27501231 |
acatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaagg |
27501290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 27554223 - 27554258
Alignment:
| Q |
134 |
agacatacaagaatgggttttcatttacctggtatc |
169 |
Q |
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| T |
27554223 |
agacatacaagaatgggttttcgtttacctggtatc |
27554258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 27498329 - 27498409
Alignment:
| Q |
136 |
acatacaagaatgggttttcatttacctggtatca---gaagggcatcatcttctaaaggcttggatatgccaaagggata |
213 |
Q |
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| T |
27498329 |
acatacgaaaatgggttttcgtttaccaggtatcatcagaaggacatcgtcttcaaaaggcgtggacatgccaaagggata |
27498409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 27570424 - 27570381
Alignment:
| Q |
15 |
ctatatatattcatgactgctaaacatttcgaaccaacacaaatc |
59 |
Q |
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| T |
27570424 |
ctatatatattcatgactgc-aagcatttagaaccaacacaaatc |
27570381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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