View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10158_high_4 (Length: 235)
Name: NF10158_high_4
Description: NF10158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10158_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 49446372 - 49446138
Alignment:
| Q |
1 |
ttggcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctcct |
100 |
Q |
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| T |
49446372 |
ttggcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctcct |
49446273 |
T |
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| Q |
101 |
tgtggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggc |
200 |
Q |
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| T |
49446272 |
tgtggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggc |
49446173 |
T |
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| Q |
201 |
tttacttccattagacttccctgcctcaaaatcct |
235 |
Q |
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| T |
49446172 |
tttacttccattagacttccctgcctcaaaatcct |
49446138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 17642192 - 17642086
Alignment:
| Q |
129 |
aaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctca |
228 |
Q |
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| T |
17642192 |
aaattgcttgttagcattctaacctgcaggactcttgttgttctcgagttttatgggttcgctgtgaaggggttttctttctttagactcctctccctca |
17642093 |
T |
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| Q |
229 |
aaatcct |
235 |
Q |
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| T |
17642092 |
aaatcct |
17642086 |
T |
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