View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10158_low_1 (Length: 630)
Name: NF10158_low_1
Description: NF10158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10158_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 595
Target Start/End: Original strand, 39688356 - 39688968
Alignment:
| Q |
13 |
agcacagacaaaaatcatgtttttgttcatcacggaagtgtatcttccacttactataactgtattacacaccccacataaaagtactgaaattgagcac |
112 |
Q |
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| T |
39688356 |
agcacagacaaaaatcatgtttttgttcatcacggaagtgtatcttccacttactataactgtattacacaccccacataaaagtactgaaattgagcac |
39688455 |
T |
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| Q |
113 |
tcaattcaacccaacccaccaacattgttagttg-------gcctctttttgatctgctatatacttgcaccgacacatccacatgttgtttcttgcatt |
205 |
Q |
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| T |
39688456 |
tcaattcaacctaacccaccaacattgttagttgctagttggcctctttttgatcttctatatacttgcaccgacacatccacatgttgtttcttacatt |
39688555 |
T |
|
| Q |
206 |
gacatcactccgttgcttatggattagca---ggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctca |
302 |
Q |
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| T |
39688556 |
gacatcactccgttgcttatggattagcataaggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctca |
39688655 |
T |
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| Q |
303 |
taagaataagaaacatatgctgctcaaatgaacaaaattaacaaatttacgatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatat |
402 |
Q |
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| T |
39688656 |
taagaataagaaacatatgctgctcaaatgaacaaaattaacaaatttacgatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatat |
39688755 |
T |
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| Q |
403 |
gatgaagcttttttaggttgtattgtgttctagtgtcctaggaactctcaataaagtcaaagttgatga--------------------tccatgctatg |
482 |
Q |
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| T |
39688756 |
gatgaagcttttttaggttgtattgtgttctagtgtcctaggagctctcaataaagtcaaagttgatgatacaagacctaattttatattccatgctatg |
39688855 |
T |
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| Q |
483 |
ataacaacagtgttacattcttcacctgtatagataataacatatctttgattaattattgcacaatgataccaatatgtaaccattgagataaatgtga |
582 |
Q |
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| T |
39688856 |
ataacaacagtgttacattcttcacctgtgtagataataacatatctttgattaattattgcacaatgataccaatatgtaaccattgagataaatgtga |
39688955 |
T |
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| Q |
583 |
aagtgaaatgtgt |
595 |
Q |
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| T |
39688956 |
aagtgaaatgtgt |
39688968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 30903094 - 30903004
Alignment:
| Q |
229 |
ttagcaggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaacata |
319 |
Q |
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| T |
30903094 |
ttagcaggatctccaattcaaaataaccaagttaataactgctagatgaatcaaggtacctagctgcaatctcaggagaataagaaacata |
30903004 |
T |
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