View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10158_low_11 (Length: 223)
Name: NF10158_low_11
Description: NF10158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10158_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 48091423 - 48091611
Alignment:
| Q |
1 |
caacgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattg |
100 |
Q |
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| T |
48091423 |
caacgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattg |
48091522 |
T |
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| Q |
101 |
attatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagttaagataatcattcatttctattt |
189 |
Q |
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| T |
48091523 |
attatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagttaagataatcattcatttctattt |
48091611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 48074379 - 48074531
Alignment:
| Q |
13 |
tttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatccaactc |
112 |
Q |
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| T |
48074379 |
tttgtttttggtgattcacttgttgacaatggcaacaataactacttagcaaccactgctcgtgctgattcttacccttatggcattgattatccaactc |
48074478 |
T |
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| Q |
113 |
gtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagt |
165 |
Q |
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| T |
48074479 |
accgtgccactggacgcttctccaatggcctcaacatgcctgaccttatcagt |
48074531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 1807235 - 1807383
Alignment:
| Q |
7 |
gctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
106 |
Q |
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| T |
1807235 |
gctttttttgtatttggagattcacttgttgataatggaaataacaattatttgcttacaactgctcgtgctgattctcctccttatggaattgattatc |
1807334 |
T |
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| Q |
107 |
caactcgtagacccaccggacgtttctctaatggctacaacattcctga |
155 |
Q |
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| T |
1807335 |
caactcgtaaaccaactggtcgtttttcaaatggcttcaatattcctga |
1807383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 48100337 - 48100499
Alignment:
| Q |
7 |
gctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
106 |
Q |
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||||||||||| ||||||||||| |||||||| | ||| ||||| ||||| || | |||||||||| | |||||| ||||||||||||| |||||||||| |
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| T |
48100337 |
gctttctttgtatttggtgattcacttgttgacagtggcaacaacaattatttggtaactactgctagggctgattctcctccttatggaattgattatc |
48100436 |
T |
|
| Q |
107 |
caactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagttaag |
169 |
Q |
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| T |
48100437 |
cgaccggtaggccaaccggtcgattctccaatggtctcaatattcctgatcttatcagttaag |
48100499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 48083711 - 48083776
Alignment:
| Q |
91 |
tatggcattgattatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgac |
156 |
Q |
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| T |
48083711 |
tatggcattgattatccaagtcacaggcctacagggcgtttctctaatggctacaatatccctgac |
48083776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 7388350 - 7388254
Alignment:
| Q |
10 |
ttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
106 |
Q |
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| T |
7388350 |
ttcttagtgtttggagattcacttgttgataatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatc |
7388254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 35355392 - 35355230
Alignment:
| Q |
4 |
cgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgatt |
103 |
Q |
| |
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||||||||||| |||||||| || || |||||||||||||| || || |||| || || || | || ||||| || ||| |||||||||||||||| |
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| T |
35355392 |
cgtgctttcttcgtgtttggagactcacttgttgataatggcaataacaattttttggctacctcggcgcgagccaattatccaccttatggcattgatt |
35355293 |
T |
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| Q |
104 |
atccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagtt |
166 |
Q |
| |
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|||||||||| |||||| ||||||||||| ||||||| ||| ||||||| || ||||||| |
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| T |
35355292 |
ttccaactcgtcaacccactggacgtttctccaatggcttaaacgttcctgatttaatcagtt |
35355230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 29769856 - 29769753
Alignment:
| Q |
4 |
cgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgatt |
103 |
Q |
| |
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|||||||||||||| |||||||| || |||||||| | ||| ||||||||||| || ||| || || || || || |||||||||||||||| |||| |
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| T |
29769856 |
cgtgctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgatt |
29769757 |
T |
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| Q |
104 |
atcc |
107 |
Q |
| |
|
|||| |
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| T |
29769756 |
atcc |
29769753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 6343196 - 6343053
Alignment:
| Q |
13 |
tttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatccaactc |
112 |
Q |
| |
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||||| ||||||||||||||||| |||||||| || ||||| | | |||| ||||||||||| |||||| | ||||||||| ||||||| || ||||| |
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| T |
6343196 |
tttgtttttggtgattctcttgtggataatggaaataataacttcctagccactactgctcgtgctgattcatatccttatggaattgattctcaaactc |
6343097 |
T |
|
| Q |
113 |
gtagacccaccggacgtttctctaatggctacaacattcctgac |
156 |
Q |
| |
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|||| | | || |||||||| |||||| |||||| |||||| |
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| T |
6343096 |
atagagcttctggtcgtttctccaatggcctcaacatgcctgac |
6343053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 12945955 - 12945917
Alignment:
| Q |
19 |
tttggtgattctcttgttgataatggtaacaataattac |
57 |
Q |
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| T |
12945955 |
tttggagattctcttcttgataatggtaacaataattac |
12945917 |
T |
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