View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10158_low_2 (Length: 606)

Name: NF10158_low_2
Description: NF10158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10158_low_2
NF10158_low_2
[»] chr8 (17 HSPs)
chr8 (1-602)||(26100181-26100783)
chr8 (1-76)||(37684380-37684455)
chr8 (516-582)||(25933190-25933256)
chr8 (1-95)||(32927848-32927942)
chr8 (1-95)||(7533753-7533848)
chr8 (1-59)||(38868490-38868548)
chr8 (1-102)||(463148-463249)
chr8 (1-53)||(13384689-13384741)
chr8 (1-56)||(15677851-15677906)
chr8 (1-100)||(44141085-44141184)
chr8 (1-47)||(4662938-4662984)
chr8 (1-95)||(36200167-36200261)
chr8 (1-53)||(10367993-10368045)
chr8 (1-56)||(18355883-18355938)
chr8 (5-40)||(35495001-35495036)
chr8 (1-57)||(7244636-7244692)
chr8 (1-53)||(30098908-30098960)
[»] chr4 (25 HSPs)
chr4 (1-95)||(32818405-32818499)
chr4 (44-136)||(37353361-37353453)
chr4 (44-136)||(37365335-37365427)
chr4 (18-101)||(43868086-43868169)
chr4 (1-74)||(33456351-33456424)
chr4 (1-76)||(30357487-30357562)
chr4 (1-95)||(33560605-33560700)
chr4 (1-95)||(35065019-35065113)
chr4 (1-95)||(49138798-49138891)
chr4 (19-95)||(25319003-25319080)
chr4 (1-100)||(50061663-50061762)
chr4 (520-602)||(29548730-29548812)
chr4 (4-74)||(53713599-53713669)
chr4 (12-101)||(22250176-22250265)
chr4 (1-53)||(8604657-8604709)
chr4 (1-101)||(9064181-9064281)
chr4 (530-602)||(29554907-29554979)
chr4 (1-93)||(39386591-39386683)
chr4 (13-108)||(54705437-54705533)
chr4 (1-95)||(8330071-8330166)
chr4 (1-76)||(26617443-26617518)
chr4 (1-44)||(45011881-45011924)
chr4 (1-54)||(30357644-30357697)
chr4 (1-74)||(30889764-30889837)
chr4 (12-101)||(46344878-46344966)
[»] chr6 (13 HSPs)
chr6 (1-102)||(5724665-5724766)
chr6 (2-102)||(765422-765522)
chr6 (1-102)||(4910857-4910958)
chr6 (1-108)||(25195401-25195506)
chr6 (14-77)||(16540081-16540144)
chr6 (6-56)||(4907958-4908008)
chr6 (1-94)||(6654125-6654218)
chr6 (1-76)||(1485181-1485256)
chr6 (14-101)||(7280440-7280527)
chr6 (5-47)||(7952748-7952790)
chr6 (1-35)||(19601480-19601514)
chr6 (1-53)||(3436917-3436969)
chr6 (1-53)||(6895985-6896037)
[»] chr1 (14 HSPs)
chr1 (1-108)||(6021747-6021854)
chr1 (1-102)||(28083923-28084024)
chr1 (1-106)||(31362240-31362341)
chr1 (1-132)||(7790677-7790807)
chr1 (1-56)||(11049245-11049300)
chr1 (1-56)||(28287371-28287426)
chr1 (1-101)||(1514294-1514393)
chr1 (1-64)||(10324973-10325036)
chr1 (1-48)||(51500869-51500916)
chr1 (1-47)||(30557508-30557554)
chr1 (1-41)||(33693031-33693071)
chr1 (11-102)||(50571233-50571324)
chr1 (1-94)||(47892423-47892516)
chr1 (1-41)||(7524123-7524163)
[»] chr5 (10 HSPs)
chr5 (1-61)||(6951340-6951400)
chr5 (1-74)||(42858085-42858158)
chr5 (1-53)||(9818732-9818784)
chr5 (1-92)||(18851117-18851208)
chr5 (5-76)||(34250390-34250461)
chr5 (24-100)||(27374349-27374425)
chr5 (1-53)||(38845441-38845493)
chr5 (1-95)||(43310575-43310669)
chr5 (5-41)||(1102144-1102181)
chr5 (1-53)||(3738143-3738195)
[»] chr7 (9 HSPs)
chr7 (3-138)||(41386852-41386987)
chr7 (1-120)||(5489881-5490000)
chr7 (1-77)||(31625397-31625473)
chr7 (2-41)||(28725088-28725127)
chr7 (12-56)||(17111852-17111896)
chr7 (19-77)||(26984533-26984591)
chr7 (1-95)||(27571818-27571912)
chr7 (19-93)||(36270938-36271012)
chr7 (4-102)||(40491527-40491625)
[»] chr2 (10 HSPs)
chr2 (1-102)||(12037010-12037111)
chr2 (1-89)||(2002730-2002818)
chr2 (1-97)||(10618976-10619072)
chr2 (1-102)||(30503158-30503259)
chr2 (1-53)||(42740975-42741027)
chr2 (1-76)||(33019191-33019266)
chr2 (2-56)||(43501120-43501174)
chr2 (1-92)||(22535957-22536048)
chr2 (61-109)||(7630358-7630406)
chr2 (66-102)||(43501092-43501128)
[»] chr3 (14 HSPs)
chr3 (11-95)||(1441426-1441510)
chr3 (1-55)||(52364047-52364101)
chr3 (1-100)||(25359609-25359707)
chr3 (1-95)||(41115396-41115491)
chr3 (12-76)||(7717367-7717431)
chr3 (1-92)||(32523375-32523467)
chr3 (1-76)||(35058336-35058411)
chr3 (1-64)||(40147885-40147948)
chr3 (1-136)||(47356280-47356415)
chr3 (1-47)||(31492771-31492817)
chr3 (1-95)||(54596774-54596868)
chr3 (1-102)||(44771643-44771744)
chr3 (17-77)||(32111968-32112028)
chr3 (1-53)||(35058065-35058117)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-102)||(31775-31876)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-77)||(14149-14224)


Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Original strand, 26100181 - 26100783
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagac-aaagtcaattctacttggaagcaaccaaacatgttaga 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26100181 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagaccaaagtcaattctacttggaagcaaccaaacatgttaga 26100280  T
Q  100 atcgattatgacctctctagaagtggaaccaaacatattcgatgaaatttatgtcggactaatatgattttcccaataaaagagtaggcgttgaaaatag 199  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26100281 atcgattatgacctctctagaagtggaaccaaacatattggatgaaatttatgtcggactaatatgattttcccaataaaagagtaggcgttgaaaatag 26100380  T
Q  200 agtgttaatgtgggtgctcctagcactaaacatgtgaaaaataaaaagtattggtgaagccaagcaaattaacaaagtatataacaaaactaaattattg 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26100381 agtgttaaagtgggtgctcctagcactaaacatgtgaaaaataaaaagtattggtgaagccaagcaaattaacaaagtatataacaaaactaaattattg 26100480  T
Q  300 atacacaaatgtgcctaattgcaataaatgtcctgggaaatatgttacaagaatcaacattatttcatttcttttagtactaacattaagacaataataa 399  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26100481 atacacaaatgtgcctaattgcaacaaatgtcctgggaaataggttacaagaataaacattatttcatttcttttagtactaacattaagacaataataa 26100580  T
Q  400 tagttaaatcacctacttcatcactgccatactatttactataaagtatgagtattaatttctaagtataagagttaagggaagtaaacatttttgaagg 499  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26100581 tagttaaatcacctacttcatcactgccatattatttactataaagtatgagtattaatttctaagtataagagttaagggaagtaaacatttttgaagg 26100680  T
Q  500 aaaagaaggaaaagcctgatgagtggggacggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaac 599  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26100681 aaaagaaggaaaagcctgatgagtggggaaggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaac 26100780  T
Q  600 gtg 602  Q
    |||    
T  26100781 gtg 26100783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37684455 - 37684380
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||||||| ||||||||||||| |||||||||| |||||| ||||| ||||||| |||||||| |||||||||||    
T  37684455 aaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaatcaattctact 37684380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 582
Target Start/End: Original strand, 25933190 - 25933256
Alignment:
Q  516 tgatgagtggggacggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgt 582  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  25933190 tgatgagtggggaaggaaaagtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgt 25933256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32927942 - 32927848
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    |||| |||| || |||||||||||||||||||||||||||| ||||| ||| | | ||| |||| ||||||||||| | ||||||||||||||||    
T  32927942 aaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgt 32927848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7533848 - 7533753
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta-gagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| ||||||||||||||| |||   || ||| || ||||| |||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  7533848 aaatcaattttagaatcaaaagctagaaactttatcttaaagtagaaacaattccacgagacaaaatcaattctacttgaaagcaaccaaacatgt 7533753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38868548 - 38868490
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagag 59  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||| |||||    
T  38868548 aaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaattttagag 38868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 463148 - 463249
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||| |||| |||||||| || ||||||||| ||| |||||||||||  ||||||| | ||||| ||||||||||| |  | ||||||||||| ||||||    
T  463148 aaataaattctagaatcataaactacaaatcttagtttcaaatagaattaattctaaaaacaaaatcaattctactagacaacaaccaaacatattagaa 463247  T
Q  101 tc 102  Q
    ||    
T  463248 tc 463249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13384689 - 13384741
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||| |||||    
T  13384689 aaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15677851 - 15677906
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    ||||||||| || |||||||||||| ||||||||||||||| ||||| ||||||||    
T  15677851 aaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattcta 15677906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 44141085 - 44141184
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||| | ||||||||||| |||||||||||| |||||| ||||| ||||| | ||| |||| ||||||||||| |  | ||| || |||||||||||    
T  44141085 aaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 44141184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4662938 - 4662984
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 47  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  4662938 aaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaa 4662984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36200167 - 36200261
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| ||||||||||| | ||||||| || |||||| | ||| ||||||| |||||| |  ||||||||||||  ||||| |||||||||    
T  36200167 aaatcaattctagaatcaaaatcgacaaatcataacttcaagttgaatcaattctggagacataaacaattctacttgccagcaagcaaacatgt 36200261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10368045 - 10367993
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    |||| |||| |||||||||||||| ||||||||||| |||| |||||||||||    
T  10368045 aaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaatt 10367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18355883 - 18355938
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    ||||||||| ||||||||||||  |||||||||||||||||  |||| ||||||||    
T  18355883 aaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaattcta 18355938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 35495036 - 35495001
Alignment:
Q  5 caattatagaatcaaaagctacaaatcctagcttca 40  Q
    ||||| ||||||||||||||||||||||||||||||    
T  35495036 caattctagaatcaaaagctacaaatcctagcttca 35495001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7244636 - 7244692
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctag 57  Q
    ||||||||| ||||||||||| ||||| ||| ||| ||||| ||||| |||||||||    
T  7244636 aaatcaattctagaatcaaaaactacatatcttagtttcaagtagaatcaattctag 7244692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30098960 - 30098908
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    |||| |||| ||||||| |||||||||||| ||||||||||||| || |||||    
T  30098960 aaattaattctagaatcgaaagctacaaattctagcttcaaataaaatcaatt 30098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32818405 - 32818499
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||| |||| ||||||||||| | ||| ||||||| ||||    
T  32818405 aaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattctactcgaaagaaaccaaatatgt 32818499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 37353453 - 37353361
Alignment:
Q  44 agaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaatcgattatgacctctctagaagtggaaccaaacata 136  Q
    |||| ||||| |||||||||||||||||||||| | || ||| ||||||||||| |||| |||||||||  ||||||| ||||||||||||||    
T  37353453 agaatcaattttagagacaaagtcaattctactcgaaaacaagcaaacatgttaaaatcaattatgacccttctagaaatggaaccaaacata 37353361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 37365427 - 37365335
Alignment:
Q  44 agaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaatcgattatgacctctctagaagtggaaccaaacata 136  Q
    |||| ||||| |||||||||||||||||||||| | || ||| ||||||||||| |||| |||||||||  ||||||| ||||||||||||||    
T  37365427 agaatcaattttagagacaaagtcaattctactcgaaaacaagcaaacatgttaaaatcaattatgacccttctagaaatggaaccaaacata 37365335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 43868169 - 43868086
Alignment:
Q  18 aaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaat 101  Q
    |||||||||||||| ||  ||||||||||| ||||| | |||||||| | ||||||||| | ||||||||||||||||||||||    
T  43868169 aaaagctacaaatcttaatttcaaatagaatcaattgtggagacaaaattaattctactagaaagcaaccaaacatgttagaat 43868086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33456424 - 33456351
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattcta 74  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||  ||||||||||||  | |||||||||    
T  33456424 aaatcaattatagaatcaaaagctacaaatcatagttttaaatagaataaattctagagacggaatcaattcta 33456351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30357562 - 30357487
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    |||||||||||| ||||||||||||||||||  |||||||| ||||| |||||||| ||| ||| |||||| ||||    
T  30357562 aaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattctaaagataaaatcaattatact 30357487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33560605 - 33560700
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagctt-caaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    |||||| || |||| ||||||||||||||||||||||| |   ||||| ||||||||||| |||| ||||||||||| |  |||||||||||||||    
T  33560605 aaatcacttttagactcaaaagctacaaatcctagctttcggttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgt 33560700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35065113 - 35065019
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| ||||||||||||  |||||| |||||||||| || || ||||| | ||| |||| ||||||||||| | ||||||||||| ||||    
T  35065113 aaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgt 35065019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 49138798 - 49138891
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || | | ||| |||| |||||| |||||| || |||||||||||||    
T  49138798 aaatcaattttagaatcaaaagttacaaatcctagcttcaagtagaa-taagtttggaggcaaaatcaattttacttgaaaacaaccaaacatgt 49138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 25319080 - 25319003
Alignment:
Q  19 aaagctacaaatcctagcttcaaat-agaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    |||||||||||||||| |||||| | |||| ||||||| |||||||| ||||||||||| |  |||||||||||||||    
T  25319080 aaagctacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgt 25319003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 50061663 - 50061762
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||| | ||||||||||| |||||||||||| |||||| ||||| ||||| | ||| |||| ||||||||||| |  | ||| || |||||||||||    
T  50061663 aaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 50061762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 29548730 - 29548812
Alignment:
Q  520 gagtggggacggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaacgtg 602  Q
    |||||| || || ||||| |||||||| ||||||||||| ||||| || ||||||||| ||||||| || || ||||||||||    
T  29548730 gagtggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtg 29548812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 53713599 - 53713669
Alignment:
Q  4 tcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattcta 74  Q
    |||||||||||||||||||||||||||| ||||||||| || ||  |||||| || ||||| | |||||||    
T  53713599 tcaattatagaatcaaaagctacaaatcgtagcttcaagtaaaattaattcttgaaacaaaattaattcta 53713669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 22250265 - 22250176
Alignment:
Q  12 agaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaat 101  Q
    ||||||||||||| ||| | || ||||||| |||||||||| |||||  |||| ||||||||| |||  | ||||||||||||| |||||    
T  22250265 agaatcaaaagcttcaatttcttgcttcaagtagaaccaatcctagatgcaaaatcaattctaattgagaacaaccaaacatgtcagaat 22250176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8604657 - 8604709
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| ||||| |||||    
T  8604657 aaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 9064281 - 9064181
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| ||||||||||| |||||||| |||| ||||| ||||| ||||| | | | |||| | ||||||| | |  | ||||||||||||||||||    
T  9064281 aaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaattatggtggcaaatttaattctattcgacaacaaccaaacatgttagaa 9064182  T
Q  101 t 101  Q
    |    
T  9064181 t 9064181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 602
Target Start/End: Original strand, 29554907 - 29554979
Alignment:
Q  530 ggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaacgtg 602  Q
    ||||||||||| ||||| || |||||||| |||| ||| ||||||||| |||||||||| || || |||||||    
T  29554907 ggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtg 29554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39386683 - 39386591
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacat 93  Q
    |||||||||||||||| ||| | || ||||  |||||| || ||||| ||||| |||||||| | |||||||||||||  | |||||||||||    
T  39386683 aaatcaattatagaattaaatgttataaattttagctttaagtagaatcaattttagagacagaatcaattctacttgtcaacaaccaaacat 39386591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 54705437 - 54705533
Alignment:
Q  13 gaatcaaaagctacaaatcctagcttcaa-atagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaatcgattat 108  Q
    ||||||||||||||||| |||||||||||  ||| | ||||| | ||| |||| |||||| ||||||  |||||||||||||||  ||||| |||||    
T  54705437 gaatcaaaagctacaaaccctagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtctgaatcaattat 54705533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8330166 - 8330071
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaa-atagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    |||||||||||||||||||||||| ||| | ||||||||||  ||||| | ||| | ||| || | |||||| ||||||  |||||||||||||||    
T  8330166 aaatcaattatagaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacatgt 8330071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26617518 - 26617443
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||||||| || |||||||||||||| || |||||||||| ||||| || || | ||| |||| |||||||||||    
T  26617518 aaatcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatcaattctact 26617443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45011924 - 45011881
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaata 44  Q
    ||||||||| |||||||||||||||||||||| || ||||||||    
T  45011924 aaatcaattctagaatcaaaagctacaaatcccagtttcaaata 45011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30357697 - 30357644
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattc 54  Q
    |||| ||||||| |||||||||||||| ||| ||||||||| ||||| ||||||    
T  30357697 aaataaattatataatcaaaagctacagatcatagcttcaattagaatcaattc 30357644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30889837 - 30889764
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattcta 74  Q
    ||||||||| || ||||||||  |||||||| ||  | ||| ||||| |||||||||||||||| |||||||||    
T  30889837 aaatcaattctacaatcaaaatttacaaatcttaattgcaagtagaatcaattctagagacaaaatcaattcta 30889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 46344878 - 46344966
Alignment:
Q  12 agaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaat 101  Q
    |||||||||||||  |||| ||| |||||| |||||  |||| | ||| |||| |||||| |||||| |||||||||||||||| |||||    
T  46344878 agaatcaaaagctggaaattctaacttcaagtagaat-aattatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaat 46344966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5724665 - 5724766
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| | ||| |||| |||||||||| || ||||| |||||||||| ||||    
T  5724665 aaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaa 5724764  T
Q  101 tc 102  Q
    ||    
T  5724765 tc 5724766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 765422 - 765522
Alignment:
Q  2 aatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaat 101  Q
    |||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||| ||| ||||  || ||||||||  ||||||||||||| || |||||    
T  765422 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaat 765521  T
Q  102 c 102  Q
    |    
T  765522 c 765522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4910958 - 4910857
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| | ||| || | ||||||||| |||    ||||||||||||| ||||    
T  4910958 aaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaattctaattgacgacaaccaaacatgtcagaa 4910859  T
Q  101 tc 102  Q
    ||    
T  4910858 tc 4910857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 25195401 - 25195506
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||||||||||||||| |||| ||||||||||  ||||||| ||||| ||||||  ||| || | |||||| |||| |  ||||||||||||||| ||||    
T  25195401 aaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatagcaaccaaacatgtcagaa 25195498  T
Q  101 tcgattat 108  Q
    || |||||    
T  25195499 tcaattat 25195506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 16540144 - 16540081
Alignment:
Q  14 aatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctactt 77  Q
    |||||||||||||||||||||||||||| ||||| ||||| | |||||| | |||||| |||||    
T  16540144 aatcaaaagctacaaatcctagcttcaagtagaatcaattttggagacagaatcaattttactt 16540081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 4908008 - 4907958
Alignment:
Q  6 aattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    |||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  4908008 aattatagaatcaaaaactacaaatcatagcttcaaataaaatcaattcta 4907958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 6654125 - 6654218
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatg 94  Q
    ||||||| | |||||| |||||||||||||||||||||||| |||||  ||||||  ||  ||| |||||||||||    ||||||||||||||    
T  6654125 aaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattctactcaatagcaaccaaacatg 6654218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1485181 - 1485256
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||||||| |||||||||||||| ||| | |||| ||||| ||||| |||||||| || |||| | |||||||||    
T  1485181 aaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaattaattctact 1485256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 7280527 - 7280440
Alignment:
Q  14 aatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaat 101  Q
    ||||||||||||||| |  ||| || || || || ||||| ||| |||| | ||||||||||||| |||||||||||||||| |||||    
T  7280527 aatcaaaagctacaagttttagttttaagtaaaatcaattttagggacacaatcaattctacttgaaagcaaccaaacatgtgagaat 7280440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 7952748 - 7952790
Alignment:
Q  5 caattatagaatcaaaagctacaaatcctagcttcaaatagaa 47  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||    
T  7952748 caattctagaatcaaaagctacaaatcctcgcttcaagtagaa 7952790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19601480 - 19601514
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctag 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  19601480 aaatcagttatagaatcaaaagctacaaatcctag 19601514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3436917 - 3436969
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    |||||||||||||||||||||| |||||||  ||| ||||| ||||| |||||    
T  3436917 aaatcaattatagaatcaaaagttacaaattatagattcaactagaatcaatt 3436969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6895985 - 6896037
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    |||| |||| |||||||||||||||||||||||| |||||  ||||| |||||    
T  6895985 aaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaatt 6896037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6021854 - 6021747
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||| | ||||||||| |||| ||||||||||||| || ||| ||||| ||| | ||    
T  6021854 aaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatcaattctacttgaaatcaatcaaacttgtcaaaa 6021755  T
Q  101 tcgattat 108  Q
    || |||||    
T  6021754 tcaattat 6021747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28083923 - 28084024
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||| ||||||||||||||||||||||||| |||||||||| ||||| |||||    ||||||| ||||||||||| | || |||||||| |||| ||||    
T  28083923 aaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatatgtcagaa 28084022  T
Q  101 tc 102  Q
    ||    
T  28084023 tc 28084024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31362240 - 31362341
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| |||||||||||||||||||| ||| |||||    ||| ||||| | ||| |||| |||||||||| || ||||||||||||||||||||     
T  31362240 aaatcaattctagaatcaaaagctacaaattctaacttca----gaatcaattatggaggcaaaatcaattctacatgaaagcaaccaaacatgttagag 31362335  T
Q  101 tcgatt 106  Q
    ||||||    
T  31362336 tcgatt 31362341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7790677 - 7790807
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||||||||||| ||| ||||||||| || |||||| ||||| |||||||| ||||||  |||||| |||||| ||  |||||  ||||| | ||    
T  7790677 aaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattctaaagacaatatcaattatacttgaaattaaccacgcatgtcacaa 7790776  T
Q  101 tcgattatgacctctctagaagtggaaccaaa 132  Q
    || ||| | ||| |||||||||||||||||||    
T  7790777 tcaatt-ttacccctctagaagtggaaccaaa 7790807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11049300 - 11049245
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||    
T  11049300 aaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattcta 11049245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28287371 - 28287426
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    ||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||    
T  28287371 aaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattcta 28287426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 1514393 - 1514294
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||  |||| | |||||| | ||| || ||| ||  ||||||||||||||| ||||    
T  1514393 aaatcaattatataataaaaagctacaaatcctagcttcaagtagaataaattttggagacagaatcagttttac-tgacagcaaccaaacatgtcagaa 1514295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10324973 - 10325036
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaa 64  Q
    |||||||||||||||||||||||||||| | ||| |||||| ||||  ||||||||||| ||||    
T  10324973 aaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaattctagaggcaaa 10325036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51500869 - 51500916
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaac 48  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  51500869 aaatcaattctagaatcaaaagctacaaatcctaggttcaagtagaac 51500916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30557554 - 30557508
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 47  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  30557554 aaatcaattctagaatcaaaaactacaaatcctagcttcaactagaa 30557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33693071 - 33693031
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaa 41  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  33693071 aaatcaattatagaatcaaaagctacaatttctagcttcaa 33693031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 50571324 - 50571233
Alignment:
Q  11 tagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaatc 102  Q
    |||||| |||| |||||||||||| |||||| ||||| |||||||  ||| ||| ||||||  | | |  ||||||||||||||||||||||    
T  50571324 tagaataaaaaactacaaatcctaacttcaagtagaatcaattctgaagataaaatcaatttaaatcgatagcaaccaaacatgttagaatc 50571233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 47892423 - 47892516
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatg 94  Q
    ||||||||| |||||||||||||| ||| | ||||||| || ||||| || ||||||    ||| |||||||||||   |||||||||||||||    
T  47892423 aaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatcagttctaggtgaaaaatcaattctactcaaaagcaaccaaacatg 47892516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7524163 - 7524123
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaa 41  Q
    ||||||||| || ||||||||||||||||||||| ||||||    
T  7524163 aaatcaattctataatcaaaagctacaaatcctaacttcaa 7524123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6951340 - 6951400
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagac 61  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||    
T  6951340 aaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaattatagagac 6951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42858158 - 42858085
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattcta 74  Q
    |||||||||||||||| ||||||| ||||||||| |||||| || || ||||||||||| |||| | |||||||    
T  42858158 aaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattctagagtcaaaatgaattcta 42858085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9818784 - 9818732
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||    
T  9818784 aaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18851117 - 18851208
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaaca 92  Q
    ||||||||| || |||||||||||||||||| ||||||||| ||||| ||||| ||| || |   ||||||||| |||  ||||||||||||    
T  18851117 aaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattatagggataggatcaattctaattgatagcaaccaaaca 18851208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 34250390 - 34250461
Alignment:
Q  5 caattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||| |||||||||||||||||| | ||||| |||| ||||| ||||||||||| || | |||||||||||    
T  34250390 caattgtagaatcaaaagctacaatttctagcatcaagtagaatcaattctagaggcataatcaattctact 34250461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 27374349 - 27374425
Alignment:
Q  24 tacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||||| |||||| ||||| |||||||  || |||| | ||||||||||| || ||||||||||||| ||||    
T  27374349 tacaaatcctaacttcaagtagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcagaa 27374425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38845493 - 38845441
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||| ||||||||||| ||||||||| ||||||||| ||||| |||||    
T  38845493 aaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43310575 - 43310669
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| || ||||||||||||||| | ||| |||||||||  | |||||||| |   ||| ||||||||||| | || |||||||||||||    
T  43310575 aaatcaattctataatcaaaagctacaatttctatcttcaaataacaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaacatgt 43310669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1102181 - 1102144
Alignment:
Q  5 caattatagaa-tcaaaagctacaaatcctagcttcaa 41  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1102181 caattatagaagtcaaaagctacaaatcctagcttcaa 1102144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3738143 - 3738195
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||||||||||||||| |||||| | ||| |||||| ||||| |||||    
T  3738143 aaatcaattatagaatcaaaaactacaacttctaacttcaactagaatcaatt 3738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 41386852 - 41386987
Alignment:
Q  3 atcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaatc 102  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||| |||||||  ||   || |||||| |||| | |||||| ||||||||| ||||||    
T  41386852 atcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatcaattatactcgaaagcaatcaaacatgtcagaatc 41386951  T
Q  103 gattatgacctctctagaagtggaaccaaacatatt 138  Q
     ||| |  ||  |||||||||| ||| |||||||||    
T  41386952 aatttttgccgttctagaagtgaaactaaacatatt 41386987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5489881 - 5490000
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||||||||||| ||||||||||| ||| | ||||| |||| ||||| ||||| | ||| |||| | |||||||||  | ||||||||||||||| ||||    
T  5489881 aaatcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgtaagaa 5489980  T
Q  101 tcgattatgacctctctaga 120  Q
    || ||| || || |||||||    
T  5489981 tcaattttggcccctctaga 5490000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31625473 - 31625397
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctactt 77  Q
    ||||||||| || || |||| ||||||||||||||||| ||  |||| |||||| ||||||||| ||||||||||||    
T  31625473 aaatcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattcaagagacaaaatcaattctactt 31625397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 28725088 - 28725127
Alignment:
Q  2 aatcaattatagaatcaaaagctacaaatcctagcttcaa 41  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaa 28725127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 17111896 - 17111852
Alignment:
Q  12 agaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  17111896 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcta 17111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 26984533 - 26984591
Alignment:
Q  19 aaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctactt 77  Q
    ||||||||||||| ||||||||| ||||| |||||||| | ||||| |||| |||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaattctacaaacaaaatcaagtctactt 26984591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27571912 - 27571818
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| |||||||||||||| ||| | ||| |||||| ||||| ||||||| |||  ||| |||||| |||| |  ||||| |||||||||    
T  27571912 aaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaaatcaattatactcgagagcaatcaaacatgt 27571818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 36271012 - 36270938
Alignment:
Q  19 aaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacat 93  Q
    |||||||||||||| | |||||| |||||  |||||||||| |||| ||||||||||| |  || ||||||||||    
T  36271012 aaagctacaaatcccaacttcaagtagaataaattctagaggcaaaatcaattctactagagagaaaccaaacat 36270938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 40491625 - 40491527
Alignment:
Q  4 tcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaatc 102  Q
    |||||| ||||||||||||||||||| | || |||||| ||||  |||||||  || |||| |||||| |  | | |||||||||| ||||||||||||    
T  40491625 tcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaaggcaaaatcaattatcttcgaaagcaaccaaccatgttagaatc 40491527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12037111 - 12037010
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| ||||||||||||||||||||  ||| ||||| ||||| |||||||||| ||| |  |||||||||  |  | ||||||||||||||||||    
T  12037111 aaatcaattgtagaatcaaaagctacaaattttagtttcaactagaatcaattctagacacataaccaattctacacgacaacaaccaaacatgttagaa 12037012  T
Q  101 tc 102  Q
    ||    
T  12037011 tc 12037010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2002730 - 2002818
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaa 89  Q
    ||||||||| |||||| |||| ||||||||||||||||||| ||||| ||  ||| ||| |||| ||||||||||| | ||||||||||    
T  2002730 aaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattctactagaaagcaaccaa 2002818  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10618976 - 10619072
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgtta 97  Q
    ||||||||||||||||||||||||  || | |||||||||| ||||| |||||||| || |||| ||||||| | | | |||||||||||| |||||    
T  10618976 aaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatcaattcaagtggaaagcaaccaaacttgtta 10619072  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 30503259 - 30503158
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| | |||||||||||||| |||||| ||||||| ||||| ||||| | ||| |||| ||| |||| |||| || ||| | ||||||||||||    
T  30503259 aaatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcatttcttcttgaaatcaatcgaacatgttagaa 30503160  T
Q  101 tc 102  Q
    ||    
T  30503159 tc 30503158  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42741027 - 42740975
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||    
T  42741027 aaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33019191 - 33019266
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||||||| || || |||||||||||||| ||||||||||||| || ||||||||||| || | |||||| ||||    
T  33019191 aaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaattctagaggcagaatcaattatact 33019266  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 43501174 - 43501120
Alignment:
Q  2 aatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattcta 56  Q
    |||||||| || |||||||||||||||||||||| ||||| ||||| ||||||||    
T  43501174 aatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaattcta 43501120  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 22536048 - 22535957
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaaca 92  Q
    |||| |||| || ||||||||||| ||||| |||  ||||| ||||| |||||||| || |||| |||||||||||||  || |||||||||    
T  22536048 aaattaattctaaaatcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaatcaattctacttgacagtaaccaaaca 22535957  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 7630406 - 7630358
Alignment:
Q  61 caaagtcaattctacttggaagcaaccaaacatgttagaatcgattatg 109  Q
    |||| ||||||||||||| |||||||||||||||| | |||| ||||||    
T  7630406 caaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaattatg 7630358  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 43501128 - 43501092
Alignment:
Q  66 tcaattctacttggaagcaaccaaacatgttagaatc 102  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  43501128 tcaattctacttgaaagcaaccaaacatgtcagaatc 43501092  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 1441426 - 1441510
Alignment:
Q  11 tagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||||||||||||||||||| ||||| ||||  | ||| |||||||||| |||||||||||   ||| ||||||||||||    
T  1441426 tagaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagaaaccaaacatgt 1441510  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 52364101 - 52364047
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattct 55  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||    
T  52364101 aaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25359609 - 25359707
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||||||||||||||| |||| |||||||| ||| |||||| ||||| ||||||| ||| || | |||||| || |||  |||||||||||||| |||||    
T  25359609 aaatcaattatagaataaaaaactacaaattctaacttcaagtagaatcaattctggaggcagaatcaatt-tatttgacagcaaccaaacatggtagaa 25359707  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41115396 - 41115491
Alignment:
Q  1 aaatcaattatagaatc-aaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| ||||| | ||||||||||||| |||||||||| ||||| |||||||| |  |||| ||||||||||||  || || ||||||||||    
T  41115396 aaatcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgt 41115491  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 7717367 - 7717431
Alignment:
Q  12 agaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||||| ||||||||| | |||||||||| ||||| ||||||| ||| |||| |||||||||||    
T  7717367 agaatcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaattctact 7717431  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32523375 - 32523467
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagctt-caaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaaca 92  Q
    ||||||||| |||||||||||||||||||||||| ||| ||| |||||  |||| | ||| |||| || ||| |||| | |||||||||||||    
T  32523375 aaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaaataattatggaggcaaaatctattttactcgaaagcaaccaaaca 32523467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35058411 - 35058336
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctact 76  Q
    ||||||||| ||||||||||||||  || | |||||| ||| ||||| ||||||| ||| |||| |||||||||||    
T  35058411 aaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaatcaattctact 35058336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40147885 - 40147948
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaa 64  Q
    ||||||||| |||||||||||||| ||||| ||||||| || ||||| |||||||  |||||||    
T  40147885 aaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattctgaagacaaa 40147948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 47356280 - 47356415
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| || |||||||  ||| ||||| || |||||| | ||| | |||||| ||||||| |||||| ||||||  ||||||||||||| | | ||    
T  47356280 aaatcaattctataatcaaagactataaatcttaacttcaagtggaatcgattctaaagacaaaatcaattatacttgatagcaaccaaacatatcataa 47356379  T
Q  101 tcgattatgacctctctagaagtggaaccaaacata 136  Q
    || ||| | |||  ||||||| |||||||| |||||    
T  47356380 tcaattttaaccattctagaaatggaaccagacata 47356415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31492817 - 31492771
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 47  Q
    ||||||||| ||||||||||||||||||||  | |||||||||||||    
T  31492817 aaatcaattctagaatcaaaagctacaaatagttgcttcaaatagaa 31492771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 54596868 - 54596774
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgt 95  Q
    ||||||||| || ||| ||||| ||||||| ||| ||||||||| || || || | ||| || | ||||||||||||| || |||||||||||||    
T  54596868 aaatcaattctaaaattaaaagttacaaattctaacttcaaataaaatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgt 54596774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44771744 - 44771643
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    ||||||||| |||||||||||||||||||| |||| || |  ||||| ||||||  ||| ||||  ||||||||| ||  |||| || ||||||| ||||    
T  44771744 aaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattccggaggcaaaaccaattctacctgatagcagcccaacatgtcagaa 44771645  T
Q  101 tc 102  Q
    ||    
T  44771644 tc 44771643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 32112028 - 32111968
Alignment:
Q  17 caaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctactt 77  Q
    ||||||||||||||  ||||||||| ||||| |||||||| | ||||| |||||| |||||    
T  32112028 caaaagctacaaattgtagcttcaagtagaatcaattctacatacaaaatcaattttactt 32111968  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35058117 - 35058065
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 53  Q
    ||||||||| || ||| |||||||||||||||||||||||  ||||| |||||    
T  35058117 aaatcaattctataattaaaagctacaaatcctagcttcatgtagaatcaatt 35058065  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31876 - 31775
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctacttggaagcaaccaaacatgttagaa 100  Q
    |||||||||  | |||||||||||||||||||||||||||| || || ||||| | ||| || | |||||| |||| |  | ||||||||||||| ||||    
T  31876 aaatcaattcaataatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaa 31777  T
Q  101 tc 102  Q
    ||    
T  31776 tc 31775  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14149 - 14224
Alignment:
Q  1 aaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagacaaagtcaattctactt 77  Q
    ||||||||| |||||||| |||||| |  | |||||||||| ||||| ||||||| | |||||| ||||||||||||    
T  14149 aaatcaattctagaatcataagctagat-tgctagcttcaagtagaatcaattcttgtgacaaaatcaattctactt 14224  T

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