View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10158_low_3 (Length: 391)
Name: NF10158_low_3
Description: NF10158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10158_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26454324 - 26454087
Alignment:
| Q |
1 |
taaagaaagataaagtgtacaattaagtggcaatatgcgatgtgtgcaatgagttgtgtgtatcacgaaacatggaacacggttgaaggtgttcaatcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26454324 |
taaagaaagataaagtgtacaattaagtggcaatatgcgatgtgtgcaatgagttgtgt--atcacgaaacatggaacaaggttgaaggtgttcaatcac |
26454227 |
T |
|
| Q |
101 |
tgcatcatgcatgatgtgtaaaaggttgtgcgcaccgcacaatgactgactattctagaaatattgaaaattgcttgcgtaaaatttgagaacagttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
26454226 |
tgcatcatgcatgatgtgtaaaaggttgtgcgcaccgcacaat----gactattatagaaatattgaaaattgcttgcgtaaaatttgaaaatagttgaa |
26454131 |
T |
|
| Q |
201 |
gctattcaatcaatgcattatgcgtgatgcatacaaggttcagg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454130 |
gctattcaatcaatgcattatgcgtgatgcatacaaggttcagg |
26454087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 243 - 375
Target Start/End: Complemental strand, 26453612 - 26453480
Alignment:
| Q |
243 |
gggtacatcacacgagggaactgcatctagggtcttaaaaaacatgttaagtcataagagcatctccaacgcctattctttcctagttttcttagcaaaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26453612 |
gggtacatcacacgagggaactgcatctagggtcttaaaaaacatgttaagtcataagagcatctccaacgcctattctttcctagttttcttagcaaaa |
26453513 |
T |
|
| Q |
343 |
gaatatatttttatgttttatgtattggagatc |
375 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
26453512 |
gaacatatttttatgttttatgtattggagatc |
26453480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 11727407 - 11727329
Alignment:
| Q |
299 |
agagcatctccaacgcctattctttcctagttttcttagcaa--aagaatatatttttatgttttatgtattggagatc |
375 |
Q |
| |
|
|||| ||||||||||| | |||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
11727407 |
agagtatctccaacgcatgttcttttctagtgttcttagcaatcaagaacatatttttatgttatatgcattggagatc |
11727329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 33948371 - 33948430
Alignment:
| Q |
318 |
ttctttcctagttttcttagcaaa--agaatatatttttatgttttatgtattggagatc |
375 |
Q |
| |
|
||||||| |||| ||||||||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
33948371 |
ttctttcttagtgttcttagcaaacaagaacatatttttatgttctatgtattggagatc |
33948430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 31704706 - 31704784
Alignment:
| Q |
299 |
agagcatctccaacgcctattctttcctagttttcttagcaaa--agaatatatttttatgttttatgtattggagatc |
375 |
Q |
| |
|
||||||||||| | ||| ||||||| |||| ||||||||||| |||| ||||||||||||| |||| |||||||||| |
|
|
| T |
31704706 |
agagcatctccgattcctgttctttcttagtattcttagcaaacaagaacatatttttatgttgtatgcattggagatc |
31704784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 47680266 - 47680340
Alignment:
| Q |
303 |
catctccaacgcctattctttcctagttttcttagcaa--aagaatatatttttatgttttatgtattggagatc |
375 |
Q |
| |
|
||||||||||| || ||||||| | || |||||||||| ||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
47680266 |
catctccaacgtctgttctttcttggtgttcttagcaaacaagaacatatttttatattttatgcattggagatc |
47680340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University