View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10158_low_9 (Length: 235)

Name: NF10158_low_9

Description: NF10158

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10158_low_9

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 235; E-Value: 1e-130

Query Start/End: Original strand, 1 - 235

Target Start/End: Complemental strand, 49446372 - 49446138

Alignment:

Q	1	ttggcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctcct	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446372	ttggcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctcct	49446273	T

Q	101	tgtggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggc	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446272	tgtggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggc	49446173	T

Q	201	tttacttccattagacttccctgcctcaaaatcct	235	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446172	tttacttccattagacttccctgcctcaaaatcct	49446138	T

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Target: chr3; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 129 - 235

Target Start/End: Complemental strand, 17642192 - 17642086

Alignment:

Q	129	aaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctca	228	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \| \| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \| \|\|\|\|\|\|\| \| \|\| \|\|\|\|\|
T	17642192	aaattgcttgttagcattctaacctgcaggactcttgttgttctcgagttttatgggttcgctgtgaaggggttttctttctttagactcctctccctca	17642093	T

Q	229	aaatcct	235	Q
		\|\|\|\|\|\|\|
T	17642092	aaatcct	17642086	T

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